Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 AC007967.2-201ENST00000432613 625 ntBASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 KRT18P3-201ENST00000451602 1288 ntBASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 AL805961.1-202ENST00000641562 540 ntBASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
SMIM28A0A1B0GU29 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
SMIM28A0A1B0GU29 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 AC108073.2-201ENST00000464002 357 ntBASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 AL590787.1-201ENST00000568856 1315 ntBASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.7■□□□□ 0.58
SMIM28A0A1B0GU29 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SMIM28A0A1B0GU29 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 AP002414.1-201ENST00000391405 1147 ntBASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SMIM28A0A1B0GU29 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms