Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
TRAIPQ9BWF2 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
TRAIPQ9BWF2 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC26.74■■□□□ 1.87
TRAIPQ9BWF2 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC26.74■■□□□ 1.87
TRAIPQ9BWF2 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC26.74■■□□□ 1.87
TRAIPQ9BWF2 AC074183.2-201ENST00000623112 922 ntBASIC26.74■■□□□ 1.87
TRAIPQ9BWF2 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
TRAIPQ9BWF2 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC26.73■■□□□ 1.87
TRAIPQ9BWF2 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC26.73■■□□□ 1.87
TRAIPQ9BWF2 MIR6765-201ENST00000614092 87 ntBASIC26.73■■□□□ 1.87
TRAIPQ9BWF2 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC26.72■■□□□ 1.87
TRAIPQ9BWF2 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
TRAIPQ9BWF2 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC26.72■■□□□ 1.87
TRAIPQ9BWF2 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC26.72■■□□□ 1.87
TRAIPQ9BWF2 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC26.72■■□□□ 1.87
TRAIPQ9BWF2 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC26.71■■□□□ 1.87
TRAIPQ9BWF2 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC26.71■■□□□ 1.87
TRAIPQ9BWF2 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC26.71■■□□□ 1.87
TRAIPQ9BWF2 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC26.7■■□□□ 1.87
TRAIPQ9BWF2 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC26.7■■□□□ 1.86
TRAIPQ9BWF2 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC26.7■■□□□ 1.86
TRAIPQ9BWF2 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC26.69■■□□□ 1.86
TRAIPQ9BWF2 AC018755.3-202ENST00000596210 929 ntBASIC26.69■■□□□ 1.86
TRAIPQ9BWF2 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC26.69■■□□□ 1.86
TRAIPQ9BWF2 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
TRAIPQ9BWF2 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
TRAIPQ9BWF2 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
TRAIPQ9BWF2 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
TRAIPQ9BWF2 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC26.68■■□□□ 1.86
TRAIPQ9BWF2 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
TRAIPQ9BWF2 LINC01003-201ENST00000564834 1764 ntBASIC26.68■■□□□ 1.86
TRAIPQ9BWF2 IDNK-203ENST00000405990 629 ntTSL 2 BASIC26.67■■□□□ 1.86
TRAIPQ9BWF2 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
TRAIPQ9BWF2 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC26.66■■□□□ 1.86
TRAIPQ9BWF2 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
TRAIPQ9BWF2 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
TRAIPQ9BWF2 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
TRAIPQ9BWF2 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
TRAIPQ9BWF2 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
TRAIPQ9BWF2 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
TRAIPQ9BWF2 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC26.65■■□□□ 1.86
TRAIPQ9BWF2 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
TRAIPQ9BWF2 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
TRAIPQ9BWF2 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC26.65■■□□□ 1.86
TRAIPQ9BWF2 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
TRAIPQ9BWF2 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC26.65■■□□□ 1.86
TRAIPQ9BWF2 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC26.65■■□□□ 1.86
TRAIPQ9BWF2 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
TRAIPQ9BWF2 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC26.64■■□□□ 1.86
TRAIPQ9BWF2 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC26.64■■□□□ 1.86
TRAIPQ9BWF2 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC26.64■■□□□ 1.85
TRAIPQ9BWF2 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC26.64■■□□□ 1.85
TRAIPQ9BWF2 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC26.63■■□□□ 1.85
TRAIPQ9BWF2 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
TRAIPQ9BWF2 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
TRAIPQ9BWF2 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC26.63■■□□□ 1.85
TRAIPQ9BWF2 AL449106.1-201ENST00000608517 1980 ntBASIC26.62■■□□□ 1.85
TRAIPQ9BWF2 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC26.62■■□□□ 1.85
TRAIPQ9BWF2 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC26.62■■□□□ 1.85
TRAIPQ9BWF2 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
TRAIPQ9BWF2 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC26.61■■□□□ 1.85
TRAIPQ9BWF2 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC26.61■■□□□ 1.85
TRAIPQ9BWF2 HYI-210ENST00000486909 905 ntTSL 5 BASIC26.61■■□□□ 1.85
TRAIPQ9BWF2 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
TRAIPQ9BWF2 AL121749.1-202ENST00000609313 2153 ntBASIC26.61■■□□□ 1.85
TRAIPQ9BWF2 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC26.61■■□□□ 1.85
TRAIPQ9BWF2 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC26.6■■□□□ 1.85
TRAIPQ9BWF2 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
TRAIPQ9BWF2 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC26.6■■□□□ 1.85
TRAIPQ9BWF2 BHLHE23-202ENST00000612929 1109 ntBASIC26.6■■□□□ 1.85
TRAIPQ9BWF2 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC26.6■■□□□ 1.85
TRAIPQ9BWF2 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
TRAIPQ9BWF2 AC010980.1-201ENST00000587192 1142 ntBASIC26.59■■□□□ 1.85
TRAIPQ9BWF2 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC26.58■■□□□ 1.85
TRAIPQ9BWF2 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
TRAIPQ9BWF2 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC26.58■■□□□ 1.85
TRAIPQ9BWF2 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
TRAIPQ9BWF2 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
TRAIPQ9BWF2 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
TRAIPQ9BWF2 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
TRAIPQ9BWF2 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC26.57■■□□□ 1.84
TRAIPQ9BWF2 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC26.57■■□□□ 1.84
TRAIPQ9BWF2 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
TRAIPQ9BWF2 AC139795.1-202ENST00000500444 432 ntBASIC26.57■■□□□ 1.84
TRAIPQ9BWF2 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
TRAIPQ9BWF2 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
TRAIPQ9BWF2 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
TRAIPQ9BWF2 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC26.56■■□□□ 1.84
TRAIPQ9BWF2 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC26.56■■□□□ 1.84
TRAIPQ9BWF2 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
TRAIPQ9BWF2 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
TRAIPQ9BWF2 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
TRAIPQ9BWF2 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC26.55■■□□□ 1.84
TRAIPQ9BWF2 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
TRAIPQ9BWF2 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC26.54■■□□□ 1.84
TRAIPQ9BWF2 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
TRAIPQ9BWF2 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
TRAIPQ9BWF2 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC26.54■■□□□ 1.84
TRAIPQ9BWF2 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC26.54■■□□□ 1.84
TRAIPQ9BWF2 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 86.8 ms