Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
TTC28Q96AY4 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC25.62■■□□□ 1.69
TTC28Q96AY4 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
TTC28Q96AY4 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC25.62■■□□□ 1.69
TTC28Q96AY4 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
TTC28Q96AY4 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC25.62■■□□□ 1.69
TTC28Q96AY4 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
TTC28Q96AY4 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC25.62■■□□□ 1.69
TTC28Q96AY4 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
TTC28Q96AY4 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC25.61■■□□□ 1.69
TTC28Q96AY4 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
TTC28Q96AY4 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC25.61■■□□□ 1.69
TTC28Q96AY4 ESRRAP2-201ENST00000418437 1549 ntBASIC25.61■■□□□ 1.69
TTC28Q96AY4 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
TTC28Q96AY4 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC25.6■■□□□ 1.69
TTC28Q96AY4 AL117332.1-201ENST00000622628 974 ntBASIC25.6■■□□□ 1.69
TTC28Q96AY4 AC092028.1-203ENST00000608262 953 ntBASIC25.6■■□□□ 1.69
TTC28Q96AY4 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC25.6■■□□□ 1.69
TTC28Q96AY4 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
TTC28Q96AY4 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC25.59■■□□□ 1.69
TTC28Q96AY4 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
TTC28Q96AY4 QDPR-206ENST00000508623 601 ntTSL 3 BASIC25.59■■□□□ 1.69
TTC28Q96AY4 AC022616.5-201ENST00000518796 181 ntBASIC25.59■■□□□ 1.69
TTC28Q96AY4 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC25.59■■□□□ 1.69
TTC28Q96AY4 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
TTC28Q96AY4 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
TTC28Q96AY4 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
TTC28Q96AY4 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC25.58■■□□□ 1.69
TTC28Q96AY4 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC25.58■■□□□ 1.69
TTC28Q96AY4 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
TTC28Q96AY4 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
TTC28Q96AY4 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC25.56■■□□□ 1.68
TTC28Q96AY4 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
TTC28Q96AY4 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC25.56■■□□□ 1.68
TTC28Q96AY4 AC097381.1-201ENST00000429019 1296 ntBASIC25.56■■□□□ 1.68
TTC28Q96AY4 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC25.56■■□□□ 1.68
TTC28Q96AY4 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC25.56■■□□□ 1.68
TTC28Q96AY4 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
TTC28Q96AY4 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC25.55■■□□□ 1.68
TTC28Q96AY4 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC25.55■■□□□ 1.68
TTC28Q96AY4 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC25.55■■□□□ 1.68
TTC28Q96AY4 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC25.55■■□□□ 1.68
TTC28Q96AY4 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
TTC28Q96AY4 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC25.54■■□□□ 1.68
TTC28Q96AY4 MEST-211ENST00000437945 1455 ntTSL 5 BASIC25.54■■□□□ 1.68
TTC28Q96AY4 AC021242.3-201ENST00000607598 1377 ntBASIC25.54■■□□□ 1.68
TTC28Q96AY4 DENND3-207ENST00000518347 850 ntTSL 2 BASIC25.54■■□□□ 1.68
TTC28Q96AY4 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC25.54■■□□□ 1.68
TTC28Q96AY4 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
TTC28Q96AY4 AC137630.3-201ENST00000607245 391 ntBASIC25.54■■□□□ 1.68
TTC28Q96AY4 RARRES2P11-201ENST00000635158 484 ntBASIC25.54■■□□□ 1.68
TTC28Q96AY4 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
TTC28Q96AY4 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC25.53■■□□□ 1.68
TTC28Q96AY4 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
TTC28Q96AY4 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
TTC28Q96AY4 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
TTC28Q96AY4 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
TTC28Q96AY4 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC25.52■■□□□ 1.68
TTC28Q96AY4 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC25.52■■□□□ 1.68
TTC28Q96AY4 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC25.52■■□□□ 1.68
TTC28Q96AY4 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
TTC28Q96AY4 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC25.52■■□□□ 1.68
TTC28Q96AY4 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC25.52■■□□□ 1.68
TTC28Q96AY4 PLD4-205ENST00000553861 667 ntTSL 2 BASIC25.52■■□□□ 1.68
TTC28Q96AY4 AL512631.2-201ENST00000604634 923 ntBASIC25.52■■□□□ 1.68
TTC28Q96AY4 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
TTC28Q96AY4 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
TTC28Q96AY4 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC25.51■■□□□ 1.67
TTC28Q96AY4 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
TTC28Q96AY4 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
TTC28Q96AY4 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.67
TTC28Q96AY4 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
TTC28Q96AY4 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC25.5■■□□□ 1.67
TTC28Q96AY4 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
TTC28Q96AY4 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC25.5■■□□□ 1.67
TTC28Q96AY4 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
TTC28Q96AY4 RPS2P7-201ENST00000447334 885 ntBASIC25.49■■□□□ 1.67
TTC28Q96AY4 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC25.49■■□□□ 1.67
TTC28Q96AY4 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC25.49■■□□□ 1.67
TTC28Q96AY4 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
TTC28Q96AY4 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
TTC28Q96AY4 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
TTC28Q96AY4 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
TTC28Q96AY4 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
TTC28Q96AY4 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
TTC28Q96AY4 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
TTC28Q96AY4 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
TTC28Q96AY4 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
TTC28Q96AY4 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
TTC28Q96AY4 AL356740.2-201ENST00000601559 647 ntBASIC25.47■■□□□ 1.67
TTC28Q96AY4 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC25.47■■□□□ 1.67
TTC28Q96AY4 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
TTC28Q96AY4 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
TTC28Q96AY4 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC25.47■■□□□ 1.67
TTC28Q96AY4 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC25.46■■□□□ 1.67
TTC28Q96AY4 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
TTC28Q96AY4 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC25.45■■□□□ 1.67
TTC28Q96AY4 KRT18P24-201ENST00000344739 1156 ntBASIC25.45■■□□□ 1.66
TTC28Q96AY4 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
TTC28Q96AY4 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms