Protein–RNA interactions for Protein: Q8TB33

LINC01560, Putative uncharacterized protein encoded by LINC01560, humanhuman

Predictions only

Length 94 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01560Q8TB33 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.3■■□□□ 1
LINC01560Q8TB33 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
LINC01560Q8TB33 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
LINC01560Q8TB33 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC21.29■■□□□ 1
LINC01560Q8TB33 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.29■■□□□ 1
LINC01560Q8TB33 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
LINC01560Q8TB33 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.29■■□□□ 1
LINC01560Q8TB33 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.29■■□□□ 1
LINC01560Q8TB33 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC21.29■■□□□ 1
LINC01560Q8TB33 AC139426.1-201ENST00000568218 2529 ntBASIC21.29■■□□□ 1
LINC01560Q8TB33 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
LINC01560Q8TB33 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
LINC01560Q8TB33 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.28■■□□□ 1
LINC01560Q8TB33 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LINC01560Q8TB33 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.28■■□□□ 1
LINC01560Q8TB33 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
LINC01560Q8TB33 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
LINC01560Q8TB33 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC21.28■■□□□ 1
LINC01560Q8TB33 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
LINC01560Q8TB33 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.27■■□□□ 1
LINC01560Q8TB33 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.27■■□□□ 1
LINC01560Q8TB33 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
LINC01560Q8TB33 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LINC01560Q8TB33 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LINC01560Q8TB33 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LINC01560Q8TB33 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LINC01560Q8TB33 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC21.25■□□□□ 0.99
LINC01560Q8TB33 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
LINC01560Q8TB33 AC103724.3-201ENST00000564481 992 ntBASIC21.25■□□□□ 0.99
LINC01560Q8TB33 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
LINC01560Q8TB33 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LINC01560Q8TB33 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.24■□□□□ 0.99
LINC01560Q8TB33 HES6-204ENST00000409182 863 ntTSL 2 BASIC21.24■□□□□ 0.99
LINC01560Q8TB33 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC21.24■□□□□ 0.99
LINC01560Q8TB33 AL031848.2-201ENST00000607670 837 ntBASIC21.24■□□□□ 0.99
LINC01560Q8TB33 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LINC01560Q8TB33 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
LINC01560Q8TB33 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LINC01560Q8TB33 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
LINC01560Q8TB33 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
LINC01560Q8TB33 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
LINC01560Q8TB33 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LINC01560Q8TB33 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
LINC01560Q8TB33 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LINC01560Q8TB33 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
LINC01560Q8TB33 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
LINC01560Q8TB33 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
LINC01560Q8TB33 DRD5P2-201ENST00000421395 2012 ntBASIC21.22■□□□□ 0.99
LINC01560Q8TB33 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LINC01560Q8TB33 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LINC01560Q8TB33 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LINC01560Q8TB33 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.21■□□□□ 0.99
LINC01560Q8TB33 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.21■□□□□ 0.99
LINC01560Q8TB33 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.21■□□□□ 0.99
LINC01560Q8TB33 AC087393.1-201ENST00000582896 145 ntBASIC21.21■□□□□ 0.99
LINC01560Q8TB33 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.21■□□□□ 0.99
LINC01560Q8TB33 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LINC01560Q8TB33 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LINC01560Q8TB33 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
LINC01560Q8TB33 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LINC01560Q8TB33 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC21.2■□□□□ 0.98
LINC01560Q8TB33 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
LINC01560Q8TB33 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC21.2■□□□□ 0.98
LINC01560Q8TB33 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
LINC01560Q8TB33 AL449106.1-201ENST00000608517 1980 ntBASIC21.19■□□□□ 0.98
LINC01560Q8TB33 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC21.19■□□□□ 0.98
LINC01560Q8TB33 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LINC01560Q8TB33 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
LINC01560Q8TB33 GUSBP5-201ENST00000418136 578 ntBASIC21.19■□□□□ 0.98
LINC01560Q8TB33 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LINC01560Q8TB33 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
LINC01560Q8TB33 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.19■□□□□ 0.98
LINC01560Q8TB33 AC131212.1-201ENST00000613771 668 ntBASIC21.19■□□□□ 0.98
LINC01560Q8TB33 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
LINC01560Q8TB33 AL592295.1-201ENST00000400984 884 ntBASIC21.18■□□□□ 0.98
LINC01560Q8TB33 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
LINC01560Q8TB33 RPS2P7-201ENST00000447334 885 ntBASIC21.18■□□□□ 0.98
LINC01560Q8TB33 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LINC01560Q8TB33 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.18■□□□□ 0.98
LINC01560Q8TB33 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
LINC01560Q8TB33 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
LINC01560Q8TB33 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.18■□□□□ 0.98
LINC01560Q8TB33 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LINC01560Q8TB33 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.17■□□□□ 0.98
LINC01560Q8TB33 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.17■□□□□ 0.98
LINC01560Q8TB33 AC019171.1-201ENST00000601251 1056 ntBASIC21.17■□□□□ 0.98
LINC01560Q8TB33 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.17■□□□□ 0.98
LINC01560Q8TB33 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LINC01560Q8TB33 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LINC01560Q8TB33 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LINC01560Q8TB33 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
LINC01560Q8TB33 THA1P-201ENST00000590384 1145 ntBASIC21.16■□□□□ 0.98
LINC01560Q8TB33 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
LINC01560Q8TB33 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LINC01560Q8TB33 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LINC01560Q8TB33 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LINC01560Q8TB33 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
LINC01560Q8TB33 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LINC01560Q8TB33 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LINC01560Q8TB33 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 93.8 ms