Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC29.57■■■□□ 2.32
SMC1BQ8NDV3 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
SMC1BQ8NDV3 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC29.57■■■□□ 2.32
SMC1BQ8NDV3 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC29.57■■■□□ 2.32
SMC1BQ8NDV3 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC29.56■■■□□ 2.32
SMC1BQ8NDV3 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
SMC1BQ8NDV3 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC29.56■■■□□ 2.32
SMC1BQ8NDV3 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
SMC1BQ8NDV3 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC29.55■■■□□ 2.32
SMC1BQ8NDV3 MIR5787-201ENST00000611784 55 ntBASIC29.55■■■□□ 2.32
SMC1BQ8NDV3 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC29.54■■■□□ 2.32
SMC1BQ8NDV3 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
SMC1BQ8NDV3 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC29.54■■■□□ 2.32
SMC1BQ8NDV3 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
SMC1BQ8NDV3 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
SMC1BQ8NDV3 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC29.53■■■□□ 2.32
SMC1BQ8NDV3 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
SMC1BQ8NDV3 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
SMC1BQ8NDV3 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
SMC1BQ8NDV3 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
SMC1BQ8NDV3 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC29.51■■■□□ 2.32
SMC1BQ8NDV3 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
SMC1BQ8NDV3 RPS2P7-201ENST00000447334 885 ntBASIC29.51■■■□□ 2.31
SMC1BQ8NDV3 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
SMC1BQ8NDV3 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC29.51■■■□□ 2.31
SMC1BQ8NDV3 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
SMC1BQ8NDV3 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
SMC1BQ8NDV3 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC29.5■■■□□ 2.31
SMC1BQ8NDV3 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC29.5■■■□□ 2.31
SMC1BQ8NDV3 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
SMC1BQ8NDV3 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC29.49■■■□□ 2.31
SMC1BQ8NDV3 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
SMC1BQ8NDV3 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC29.48■■■□□ 2.31
SMC1BQ8NDV3 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
SMC1BQ8NDV3 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
SMC1BQ8NDV3 AC137630.3-201ENST00000607245 391 ntBASIC29.48■■■□□ 2.31
SMC1BQ8NDV3 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC29.48■■■□□ 2.31
SMC1BQ8NDV3 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
SMC1BQ8NDV3 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC29.47■■■□□ 2.31
SMC1BQ8NDV3 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC29.47■■■□□ 2.31
SMC1BQ8NDV3 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
SMC1BQ8NDV3 AC022616.5-201ENST00000518796 181 ntBASIC29.46■■■□□ 2.31
SMC1BQ8NDV3 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC29.46■■■□□ 2.31
SMC1BQ8NDV3 AL117332.1-201ENST00000622628 974 ntBASIC29.46■■■□□ 2.31
SMC1BQ8NDV3 AC021242.3-201ENST00000607598 1377 ntBASIC29.46■■■□□ 2.31
SMC1BQ8NDV3 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
SMC1BQ8NDV3 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC29.45■■■□□ 2.31
SMC1BQ8NDV3 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
SMC1BQ8NDV3 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
SMC1BQ8NDV3 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
SMC1BQ8NDV3 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
SMC1BQ8NDV3 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC29.44■■■□□ 2.3
SMC1BQ8NDV3 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
SMC1BQ8NDV3 AC135279.3-201ENST00000610945 1311 ntBASIC29.44■■■□□ 2.3
SMC1BQ8NDV3 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
SMC1BQ8NDV3 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC29.43■■■□□ 2.3
SMC1BQ8NDV3 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC29.43■■■□□ 2.3
SMC1BQ8NDV3 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
SMC1BQ8NDV3 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
SMC1BQ8NDV3 AL135925.1-201ENST00000605920 1701 ntBASIC29.42■■■□□ 2.3
SMC1BQ8NDV3 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
SMC1BQ8NDV3 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
SMC1BQ8NDV3 KRT18P24-201ENST00000344739 1156 ntBASIC29.42■■■□□ 2.3
SMC1BQ8NDV3 MIR3621-201ENST00000580529 85 ntBASIC29.42■■■□□ 2.3
SMC1BQ8NDV3 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
SMC1BQ8NDV3 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC29.42■■■□□ 2.3
SMC1BQ8NDV3 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
SMC1BQ8NDV3 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
SMC1BQ8NDV3 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
SMC1BQ8NDV3 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
SMC1BQ8NDV3 AC092028.1-203ENST00000608262 953 ntBASIC29.41■■■□□ 2.3
SMC1BQ8NDV3 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC29.4■■■□□ 2.3
SMC1BQ8NDV3 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC29.4■■■□□ 2.3
SMC1BQ8NDV3 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC29.39■■■□□ 2.3
SMC1BQ8NDV3 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC29.39■■■□□ 2.3
SMC1BQ8NDV3 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC29.39■■■□□ 2.3
SMC1BQ8NDV3 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC29.39■■■□□ 2.3
SMC1BQ8NDV3 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SMC1BQ8NDV3 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC29.38■■■□□ 2.29
SMC1BQ8NDV3 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
SMC1BQ8NDV3 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC29.38■■■□□ 2.29
SMC1BQ8NDV3 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
SMC1BQ8NDV3 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC29.37■■■□□ 2.29
SMC1BQ8NDV3 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
SMC1BQ8NDV3 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC29.37■■■□□ 2.29
SMC1BQ8NDV3 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
SMC1BQ8NDV3 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC29.36■■■□□ 2.29
SMC1BQ8NDV3 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC29.36■■■□□ 2.29
SMC1BQ8NDV3 LGR4-203ENST00000480977 492 ntTSL 2 BASIC29.36■■■□□ 2.29
SMC1BQ8NDV3 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC29.36■■■□□ 2.29
SMC1BQ8NDV3 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC29.36■■■□□ 2.29
SMC1BQ8NDV3 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
SMC1BQ8NDV3 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC29.36■■■□□ 2.29
SMC1BQ8NDV3 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
SMC1BQ8NDV3 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
SMC1BQ8NDV3 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC29.35■■■□□ 2.29
SMC1BQ8NDV3 PARL-206ENST00000435888 1098 ntTSL 5 BASIC29.35■■■□□ 2.29
SMC1BQ8NDV3 AC142381.2-201ENST00000566120 298 ntBASIC29.35■■■□□ 2.29
SMC1BQ8NDV3 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC29.35■■■□□ 2.29
SMC1BQ8NDV3 MIR4466-201ENST00000606121 54 ntBASIC29.35■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms