Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC28.27■■■□□ 2.12
KRT40Q6A162 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC28.27■■■□□ 2.12
KRT40Q6A162 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
KRT40Q6A162 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
KRT40Q6A162 CEP120-209ENST00000515110 606 ntTSL 3 BASIC28.26■■■□□ 2.11
KRT40Q6A162 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC28.26■■■□□ 2.11
KRT40Q6A162 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC28.26■■■□□ 2.11
KRT40Q6A162 AC092803.2-201ENST00000564287 1899 ntBASIC28.25■■■□□ 2.11
KRT40Q6A162 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
KRT40Q6A162 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
KRT40Q6A162 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC28.24■■■□□ 2.11
KRT40Q6A162 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
KRT40Q6A162 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
KRT40Q6A162 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
KRT40Q6A162 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC28.23■■■□□ 2.11
KRT40Q6A162 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
KRT40Q6A162 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC28.23■■■□□ 2.11
KRT40Q6A162 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
KRT40Q6A162 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC28.22■■■□□ 2.11
KRT40Q6A162 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC28.22■■■□□ 2.11
KRT40Q6A162 AC145676.1-201ENST00000514988 2004 ntBASIC28.22■■■□□ 2.11
KRT40Q6A162 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
KRT40Q6A162 NTF6A-201ENST00000591175 560 ntBASIC28.22■■■□□ 2.11
KRT40Q6A162 AC012354.3-201ENST00000623734 483 ntBASIC28.22■■■□□ 2.11
KRT40Q6A162 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
KRT40Q6A162 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
KRT40Q6A162 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC28.21■■■□□ 2.11
KRT40Q6A162 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC28.21■■■□□ 2.11
KRT40Q6A162 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
KRT40Q6A162 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC28.2■■■□□ 2.1
KRT40Q6A162 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
KRT40Q6A162 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC28.19■■■□□ 2.1
KRT40Q6A162 AC060814.1-201ENST00000554326 538 ntBASIC28.19■■■□□ 2.1
KRT40Q6A162 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
KRT40Q6A162 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC28.19■■■□□ 2.1
KRT40Q6A162 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
KRT40Q6A162 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC28.18■■■□□ 2.1
KRT40Q6A162 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
KRT40Q6A162 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
KRT40Q6A162 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
KRT40Q6A162 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC28.17■■■□□ 2.1
KRT40Q6A162 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
KRT40Q6A162 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
KRT40Q6A162 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC28.17■■■□□ 2.1
KRT40Q6A162 AL157400.5-201ENST00000507624 621 ntBASIC28.17■■■□□ 2.1
KRT40Q6A162 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
KRT40Q6A162 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
KRT40Q6A162 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
KRT40Q6A162 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC28.16■■■□□ 2.1
KRT40Q6A162 DUSP8P4-201ENST00000399538 1761 ntBASIC28.16■■■□□ 2.1
KRT40Q6A162 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
KRT40Q6A162 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC28.15■■■□□ 2.1
KRT40Q6A162 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC28.15■■■□□ 2.1
KRT40Q6A162 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
KRT40Q6A162 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC28.15■■■□□ 2.1
KRT40Q6A162 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
KRT40Q6A162 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
KRT40Q6A162 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
KRT40Q6A162 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC28.14■■■□□ 2.1
KRT40Q6A162 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
KRT40Q6A162 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
KRT40Q6A162 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
KRT40Q6A162 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
KRT40Q6A162 MOB2-207ENST00000614710 705 ntTSL 5 BASIC28.13■■■□□ 2.09
KRT40Q6A162 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
KRT40Q6A162 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC28.13■■■□□ 2.09
KRT40Q6A162 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC28.13■■■□□ 2.09
KRT40Q6A162 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
KRT40Q6A162 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC28.12■■■□□ 2.09
KRT40Q6A162 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
KRT40Q6A162 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
KRT40Q6A162 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC28.11■■■□□ 2.09
KRT40Q6A162 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
KRT40Q6A162 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
KRT40Q6A162 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
KRT40Q6A162 AL033527.3-201ENST00000566366 1196 ntBASIC28.11■■■□□ 2.09
KRT40Q6A162 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC28.11■■■□□ 2.09
KRT40Q6A162 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
KRT40Q6A162 ERN1-208ENST00000606895 2068 ntBASIC28.11■■■□□ 2.09
KRT40Q6A162 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
KRT40Q6A162 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
KRT40Q6A162 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
KRT40Q6A162 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC28.1■■■□□ 2.09
KRT40Q6A162 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
KRT40Q6A162 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
KRT40Q6A162 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
KRT40Q6A162 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC28.09■■■□□ 2.09
KRT40Q6A162 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC28.09■■■□□ 2.09
KRT40Q6A162 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
KRT40Q6A162 AC022413.1-201ENST00000624602 984 ntBASIC28.09■■■□□ 2.09
KRT40Q6A162 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC28.09■■■□□ 2.09
KRT40Q6A162 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
KRT40Q6A162 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
KRT40Q6A162 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
KRT40Q6A162 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC28.08■■■□□ 2.09
KRT40Q6A162 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
KRT40Q6A162 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC28.08■■■□□ 2.09
KRT40Q6A162 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
KRT40Q6A162 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC28.07■■■□□ 2.08
KRT40Q6A162 AC092296.2-201ENST00000589470 999 ntBASIC28.07■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms