Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC30.4■■■□□ 2.46
CCDC88AQ3V6T2 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
CCDC88AQ3V6T2 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CCDC88AQ3V6T2 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC30.4■■■□□ 2.46
CCDC88AQ3V6T2 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC30.4■■■□□ 2.46
CCDC88AQ3V6T2 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
CCDC88AQ3V6T2 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC30.4■■■□□ 2.46
CCDC88AQ3V6T2 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC30.39■■■□□ 2.46
CCDC88AQ3V6T2 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
CCDC88AQ3V6T2 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
CCDC88AQ3V6T2 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC30.39■■■□□ 2.46
CCDC88AQ3V6T2 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC30.39■■■□□ 2.46
CCDC88AQ3V6T2 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC30.38■■■□□ 2.45
CCDC88AQ3V6T2 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC88AQ3V6T2 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CCDC88AQ3V6T2 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC30.37■■■□□ 2.45
CCDC88AQ3V6T2 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC30.37■■■□□ 2.45
CCDC88AQ3V6T2 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC30.37■■■□□ 2.45
CCDC88AQ3V6T2 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC30.36■■■□□ 2.45
CCDC88AQ3V6T2 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC88AQ3V6T2 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC88AQ3V6T2 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC88AQ3V6T2 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC88AQ3V6T2 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
CCDC88AQ3V6T2 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CCDC88AQ3V6T2 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC30.35■■■□□ 2.45
CCDC88AQ3V6T2 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC30.35■■■□□ 2.45
CCDC88AQ3V6T2 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC30.34■■■□□ 2.45
CCDC88AQ3V6T2 KRT16P3-201ENST00000439127 1283 ntBASIC30.34■■■□□ 2.45
CCDC88AQ3V6T2 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC30.33■■■□□ 2.45
CCDC88AQ3V6T2 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC30.33■■■□□ 2.45
CCDC88AQ3V6T2 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
CCDC88AQ3V6T2 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC30.32■■■□□ 2.44
CCDC88AQ3V6T2 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
CCDC88AQ3V6T2 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
CCDC88AQ3V6T2 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CCDC88AQ3V6T2 AC131281.2-201ENST00000520478 145 ntBASIC30.31■■■□□ 2.44
CCDC88AQ3V6T2 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CCDC88AQ3V6T2 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CCDC88AQ3V6T2 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CCDC88AQ3V6T2 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC30.3■■■□□ 2.44
CCDC88AQ3V6T2 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC30.3■■■□□ 2.44
CCDC88AQ3V6T2 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
CCDC88AQ3V6T2 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC30.29■■■□□ 2.44
CCDC88AQ3V6T2 UNC93B8-201ENST00000511903 705 ntBASIC30.29■■■□□ 2.44
CCDC88AQ3V6T2 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CCDC88AQ3V6T2 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
CCDC88AQ3V6T2 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC30.28■■■□□ 2.44
CCDC88AQ3V6T2 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CCDC88AQ3V6T2 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CCDC88AQ3V6T2 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC30.27■■■□□ 2.44
CCDC88AQ3V6T2 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
CCDC88AQ3V6T2 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC30.27■■■□□ 2.44
CCDC88AQ3V6T2 AC018755.3-202ENST00000596210 929 ntBASIC30.27■■■□□ 2.44
CCDC88AQ3V6T2 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
CCDC88AQ3V6T2 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC30.26■■■□□ 2.43
CCDC88AQ3V6T2 MIR4787-201ENST00000607364 84 ntBASIC30.26■■■□□ 2.43
CCDC88AQ3V6T2 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC30.25■■■□□ 2.43
CCDC88AQ3V6T2 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
CCDC88AQ3V6T2 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
CCDC88AQ3V6T2 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC30.25■■■□□ 2.43
CCDC88AQ3V6T2 BX664725.1-201ENST00000438252 379 ntBASIC30.25■■■□□ 2.43
CCDC88AQ3V6T2 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC30.25■■■□□ 2.43
CCDC88AQ3V6T2 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CCDC88AQ3V6T2 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
CCDC88AQ3V6T2 PEMT-206ENST00000435340 960 ntTSL 5 BASIC30.24■■■□□ 2.43
CCDC88AQ3V6T2 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC30.24■■■□□ 2.43
CCDC88AQ3V6T2 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC88AQ3V6T2 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC88AQ3V6T2 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC30.23■■■□□ 2.43
CCDC88AQ3V6T2 AL359504.2-201ENST00000605506 1601 ntBASIC30.23■■■□□ 2.43
CCDC88AQ3V6T2 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
CCDC88AQ3V6T2 AC019171.1-201ENST00000601251 1056 ntBASIC30.23■■■□□ 2.43
CCDC88AQ3V6T2 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC30.22■■■□□ 2.43
CCDC88AQ3V6T2 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC30.22■■■□□ 2.43
CCDC88AQ3V6T2 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC30.22■■■□□ 2.43
CCDC88AQ3V6T2 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC30.22■■■□□ 2.43
CCDC88AQ3V6T2 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
CCDC88AQ3V6T2 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
CCDC88AQ3V6T2 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC88AQ3V6T2 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC88AQ3V6T2 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CCDC88AQ3V6T2 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC30.2■■■□□ 2.43
CCDC88AQ3V6T2 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC30.2■■■□□ 2.42
CCDC88AQ3V6T2 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC88AQ3V6T2 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC88AQ3V6T2 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC30.19■■■□□ 2.42
CCDC88AQ3V6T2 PROC-203ENST00000409048 1586 ntTSL 5 BASIC30.19■■■□□ 2.42
CCDC88AQ3V6T2 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC88AQ3V6T2 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC30.19■■■□□ 2.42
CCDC88AQ3V6T2 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC88AQ3V6T2 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC30.19■■■□□ 2.42
CCDC88AQ3V6T2 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC30.18■■■□□ 2.42
CCDC88AQ3V6T2 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC30.18■■■□□ 2.42
CCDC88AQ3V6T2 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC30.18■■■□□ 2.42
CCDC88AQ3V6T2 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC30.18■■■□□ 2.42
CCDC88AQ3V6T2 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC30.18■■■□□ 2.42
CCDC88AQ3V6T2 AC087393.1-201ENST00000582896 145 ntBASIC30.18■■■□□ 2.42
CCDC88AQ3V6T2 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
CCDC88AQ3V6T2 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC30.17■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms