Protein–RNA interactions for Protein: P03905

MT-ND4, NADH-ubiquinone oxidoreductase chain 4, humanhuman

Predictions only

Length 459 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND4P03905 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MT-ND4P03905 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MT-ND4P03905 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
MT-ND4P03905 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
MT-ND4P03905 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
MT-ND4P03905 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
MT-ND4P03905 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC21.01■□□□□ 0.95
MT-ND4P03905 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.01■□□□□ 0.95
MT-ND4P03905 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
MT-ND4P03905 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MT-ND4P03905 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
MT-ND4P03905 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
MT-ND4P03905 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
MT-ND4P03905 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
MT-ND4P03905 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21■□□□□ 0.95
MT-ND4P03905 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
MT-ND4P03905 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
MT-ND4P03905 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
MT-ND4P03905 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
MT-ND4P03905 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
MT-ND4P03905 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
MT-ND4P03905 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
MT-ND4P03905 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC20.99■□□□□ 0.95
MT-ND4P03905 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC20.99■□□□□ 0.95
MT-ND4P03905 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MT-ND4P03905 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
MT-ND4P03905 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.99■□□□□ 0.95
MT-ND4P03905 AC142381.3-201ENST00000568208 1670 ntBASIC20.99■□□□□ 0.95
MT-ND4P03905 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
MT-ND4P03905 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MT-ND4P03905 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC20.98■□□□□ 0.95
MT-ND4P03905 MED17-227ENST00000640521 2047 ntTSL 5 BASIC20.98■□□□□ 0.95
MT-ND4P03905 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MT-ND4P03905 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MT-ND4P03905 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MT-ND4P03905 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
MT-ND4P03905 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MT-ND4P03905 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
MT-ND4P03905 AC021231.2-201ENST00000594613 730 ntBASIC20.97■□□□□ 0.95
MT-ND4P03905 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MT-ND4P03905 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MT-ND4P03905 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MT-ND4P03905 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MT-ND4P03905 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
MT-ND4P03905 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MT-ND4P03905 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
MT-ND4P03905 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
MT-ND4P03905 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MT-ND4P03905 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
MT-ND4P03905 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MT-ND4P03905 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MT-ND4P03905 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MT-ND4P03905 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MT-ND4P03905 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MT-ND4P03905 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC20.95■□□□□ 0.94
MT-ND4P03905 AL139125.2-201ENST00000623134 1869 ntBASIC20.94■□□□□ 0.94
MT-ND4P03905 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MT-ND4P03905 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
MT-ND4P03905 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MT-ND4P03905 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MT-ND4P03905 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MT-ND4P03905 DUX4L29-201ENST00000425409 679 ntBASIC20.94■□□□□ 0.94
MT-ND4P03905 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MT-ND4P03905 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.94■□□□□ 0.94
MT-ND4P03905 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MT-ND4P03905 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
MT-ND4P03905 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MT-ND4P03905 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC20.93■□□□□ 0.94
MT-ND4P03905 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
MT-ND4P03905 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
MT-ND4P03905 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MT-ND4P03905 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MT-ND4P03905 AC110285.7-201ENST00000624417 1536 ntBASIC20.93■□□□□ 0.94
MT-ND4P03905 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
MT-ND4P03905 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
MT-ND4P03905 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MT-ND4P03905 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
MT-ND4P03905 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
MT-ND4P03905 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MT-ND4P03905 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
MT-ND4P03905 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MT-ND4P03905 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
MT-ND4P03905 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MT-ND4P03905 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
MT-ND4P03905 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC20.91■□□□□ 0.94
MT-ND4P03905 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC20.91■□□□□ 0.94
MT-ND4P03905 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.91■□□□□ 0.94
MT-ND4P03905 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC20.91■□□□□ 0.94
MT-ND4P03905 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
MT-ND4P03905 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
MT-ND4P03905 AC138932.3-201ENST00000567634 1902 ntBASIC20.9■□□□□ 0.94
MT-ND4P03905 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND4P03905 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND4P03905 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MT-ND4P03905 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
MT-ND4P03905 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
MT-ND4P03905 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MT-ND4P03905 PEX7-203ENST00000541292 945 ntTSL 5 BASIC20.89■□□□□ 0.93
MT-ND4P03905 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MT-ND4P03905 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms