Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
VPS4BO75351 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC23.77■■□□□ 1.4
VPS4BO75351 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
VPS4BO75351 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC23.77■■□□□ 1.4
VPS4BO75351 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC23.76■■□□□ 1.39
VPS4BO75351 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
VPS4BO75351 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
VPS4BO75351 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS4BO75351 AC012354.3-201ENST00000623734 483 ntBASIC23.76■■□□□ 1.39
VPS4BO75351 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.76■■□□□ 1.39
VPS4BO75351 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
VPS4BO75351 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC23.75■■□□□ 1.39
VPS4BO75351 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS4BO75351 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
VPS4BO75351 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
VPS4BO75351 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS4BO75351 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.75■■□□□ 1.39
VPS4BO75351 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
VPS4BO75351 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
VPS4BO75351 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS4BO75351 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC23.75■■□□□ 1.39
VPS4BO75351 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
VPS4BO75351 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC23.74■■□□□ 1.39
VPS4BO75351 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC23.74■■□□□ 1.39
VPS4BO75351 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS4BO75351 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC23.73■■□□□ 1.39
VPS4BO75351 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC23.73■■□□□ 1.39
VPS4BO75351 RPS2-210ENST00000530225 765 ntTSL 2 BASIC23.73■■□□□ 1.39
VPS4BO75351 NTF6A-201ENST00000591175 560 ntBASIC23.73■■□□□ 1.39
VPS4BO75351 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
VPS4BO75351 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
VPS4BO75351 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC23.73■■□□□ 1.39
VPS4BO75351 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
VPS4BO75351 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS4BO75351 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
VPS4BO75351 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS4BO75351 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
VPS4BO75351 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
VPS4BO75351 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
VPS4BO75351 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
VPS4BO75351 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
VPS4BO75351 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
VPS4BO75351 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC23.7■■□□□ 1.38
VPS4BO75351 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
VPS4BO75351 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
VPS4BO75351 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
VPS4BO75351 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
VPS4BO75351 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
VPS4BO75351 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
VPS4BO75351 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
VPS4BO75351 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.69■■□□□ 1.38
VPS4BO75351 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
VPS4BO75351 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC23.68■■□□□ 1.38
VPS4BO75351 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC23.68■■□□□ 1.38
VPS4BO75351 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC23.68■■□□□ 1.38
VPS4BO75351 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC23.68■■□□□ 1.38
VPS4BO75351 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
VPS4BO75351 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
VPS4BO75351 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
VPS4BO75351 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC23.67■■□□□ 1.38
VPS4BO75351 HES4-202ENST00000428771 1040 ntTSL 2 BASIC23.67■■□□□ 1.38
VPS4BO75351 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
VPS4BO75351 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.67■■□□□ 1.38
VPS4BO75351 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
VPS4BO75351 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
VPS4BO75351 AC022413.1-201ENST00000624602 984 ntBASIC23.66■■□□□ 1.38
VPS4BO75351 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
VPS4BO75351 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.66■■□□□ 1.38
VPS4BO75351 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
VPS4BO75351 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
VPS4BO75351 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC23.65■■□□□ 1.38
VPS4BO75351 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
VPS4BO75351 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
VPS4BO75351 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
VPS4BO75351 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
VPS4BO75351 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
VPS4BO75351 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
VPS4BO75351 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.65■■□□□ 1.38
VPS4BO75351 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
VPS4BO75351 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
VPS4BO75351 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC23.65■■□□□ 1.38
VPS4BO75351 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.64■■□□□ 1.38
VPS4BO75351 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
VPS4BO75351 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
VPS4BO75351 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
VPS4BO75351 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC23.64■■□□□ 1.37
VPS4BO75351 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
VPS4BO75351 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
VPS4BO75351 SNAI3-AS1-204ENST00000567997 2048 ntBASIC23.64■■□□□ 1.37
VPS4BO75351 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
VPS4BO75351 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
VPS4BO75351 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
VPS4BO75351 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
VPS4BO75351 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
VPS4BO75351 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC23.63■■□□□ 1.37
VPS4BO75351 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC23.63■■□□□ 1.37
VPS4BO75351 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC23.63■■□□□ 1.37
VPS4BO75351 AC010501.1-201ENST00000606270 1962 ntBASIC23.62■■□□□ 1.37
VPS4BO75351 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
VPS4BO75351 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms