Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TM9SF3Q9HD45 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TM9SF3Q9HD45 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TM9SF3Q9HD45 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.39
TM9SF3Q9HD45 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 AC073621.1-201ENST00000392730 636 ntBASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 DHDH-204ENST00000523250 634 ntTSL 5 BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 AC073592.5-201ENST00000624854 528 ntBASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
TM9SF3Q9HD45 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 AC022898.2-201ENST00000616822 1312 ntBASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 COX5BP2-201ENST00000392354 334 ntBASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 AC004832.2-201ENST00000426397 482 ntBASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 AC002347.1-201ENST00000569543 541 ntBASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
TM9SF3Q9HD45 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 AC023274.1-201ENST00000418278 595 ntBASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 AC108751.1-201ENST00000490852 363 ntBASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 AC136632.2-201ENST00000512891 861 ntBASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 DUTP2-201ENST00000519164 463 ntBASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.49■□□□□ 0.39
TM9SF3Q9HD45 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms