Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 HTR7P1-202ENST00000624664 4411 ntBASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 AC005104.2-201ENST00000427818 678 ntBASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 AC109462.3-201ENST00000573934 613 ntBASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 AC019129.2-201ENST00000609837 1235 ntBASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM39Q9HCM9 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.39■□□□□ 0.38
TRIM39Q9HCM9 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.39■□□□□ 0.38
TRIM39Q9HCM9 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
TRIM39Q9HCM9 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC17.39■□□□□ 0.38
TRIM39Q9HCM9 KRT8P10-201ENST00000450021 1447 ntBASIC17.39■□□□□ 0.38
TRIM39Q9HCM9 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 AC012317.2-201ENST00000623305 2251 ntBASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 AC079781.3-201ENST00000449110 356 ntBASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 AC002558.1-201ENST00000488906 803 ntBASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 IGHV3-52-201ENST00000519770 353 ntBASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 AL031008.1-201ENST00000619963 541 ntBASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 LINC01451-201ENST00000623792 534 ntBASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 REXO1L11P-201ENST00000620964 1927 ntBASIC17.39■□□□□ 0.37
TRIM39Q9HCM9 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 AC067852.2-201ENST00000590513 2313 ntBASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 PKD1P1-201ENST00000458669 6805 ntBASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 FGFR3P6-201ENST00000457012 610 ntBASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 AL160237.2-201ENST00000556165 472 ntBASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 AC104692.2-201ENST00000603054 253 ntBASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.38■□□□□ 0.37
TRIM39Q9HCM9 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 TLE1-202ENST00000376484 666 ntTSL 3 BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.37■□□□□ 0.37
TRIM39Q9HCM9 SCARNA2-201ENST00000458748 420 ntBASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms