Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
COL12A1Q99715 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.16■□□□□ 0.02
COL12A1Q99715 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.16■□□□□ 0.02
COL12A1Q99715 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.16■□□□□ 0.02
COL12A1Q99715 RPL28-206ENST00000558752 671 ntTSL 3 BASIC15.16■□□□□ 0.02
COL12A1Q99715 MIR4453-201ENST00000584019 89 ntBASIC15.16■□□□□ 0.02
COL12A1Q99715 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
COL12A1Q99715 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC15.16■□□□□ 0.02
COL12A1Q99715 STX3-203ENST00000529177 1571 ntTSL 2 BASIC15.16■□□□□ 0.02
COL12A1Q99715 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC15.16■□□□□ 0.02
COL12A1Q99715 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL12A1Q99715 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL12A1Q99715 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL12A1Q99715 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.15■□□□□ 0.02
COL12A1Q99715 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC15.15■□□□□ 0.02
COL12A1Q99715 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL12A1Q99715 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
COL12A1Q99715 AC026120.1-201ENST00000611536 926 ntBASIC15.15■□□□□ 0.02
COL12A1Q99715 MIR6727-201ENST00000620702 65 ntBASIC15.15■□□□□ 0.02
COL12A1Q99715 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC15.15■□□□□ 0.02
COL12A1Q99715 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL12A1Q99715 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL12A1Q99715 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
COL12A1Q99715 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL12A1Q99715 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC15.15■□□□□ 0.02
COL12A1Q99715 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
COL12A1Q99715 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL12A1Q99715 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL12A1Q99715 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC15.15■□□□□ 0.02
COL12A1Q99715 HARS-203ENST00000431330 1774 ntTSL 2 BASIC15.15■□□□□ 0.02
COL12A1Q99715 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
COL12A1Q99715 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
COL12A1Q99715 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL12A1Q99715 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC15.15■□□□□ 0.02
COL12A1Q99715 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL12A1Q99715 MIR4259-201ENST00000584466 101 ntBASIC15.15■□□□□ 0.02
COL12A1Q99715 AC007541.1-201ENST00000570282 1469 ntBASIC15.15■□□□□ 0.02
COL12A1Q99715 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL12A1Q99715 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL12A1Q99715 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.15■□□□□ 0.02
COL12A1Q99715 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
COL12A1Q99715 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL12A1Q99715 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL12A1Q99715 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
COL12A1Q99715 AL353779.1-201ENST00000434793 351 ntBASIC15.15■□□□□ 0.02
COL12A1Q99715 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC15.15■□□□□ 0.02
COL12A1Q99715 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
COL12A1Q99715 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
COL12A1Q99715 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL12A1Q99715 FLYWCH1P1-201ENST00000460917 1874 ntBASIC15.14■□□□□ 0.01
COL12A1Q99715 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC15.14■□□□□ 0.01
COL12A1Q99715 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL12A1Q99715 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC15.14■□□□□ 0.01
COL12A1Q99715 TPI1-206ENST00000488464 791 ntTSL 5 BASIC15.14■□□□□ 0.01
COL12A1Q99715 CXCL1P1-201ENST00000502804 216 ntBASIC15.14■□□□□ 0.01
COL12A1Q99715 IGHV3-42-201ENST00000520410 361 ntBASIC15.14■□□□□ 0.01
COL12A1Q99715 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
COL12A1Q99715 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC15.14■□□□□ 0.01
COL12A1Q99715 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL12A1Q99715 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
COL12A1Q99715 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL12A1Q99715 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC15.14■□□□□ 0.01
COL12A1Q99715 AC129492.6-201ENST00000611383 1305 ntBASIC15.14■□□□□ 0.01
COL12A1Q99715 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL12A1Q99715 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
COL12A1Q99715 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL12A1Q99715 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.14■□□□□ 0.01
COL12A1Q99715 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL12A1Q99715 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
COL12A1Q99715 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
COL12A1Q99715 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC15.14■□□□□ 0.01
COL12A1Q99715 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL12A1Q99715 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.14■□□□□ 0.01
COL12A1Q99715 NKTR-203ENST00000442970 646 ntTSL 2 BASIC15.14■□□□□ 0.01
COL12A1Q99715 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC15.14■□□□□ 0.01
COL12A1Q99715 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC15.14■□□□□ 0.01
COL12A1Q99715 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL12A1Q99715 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC15.14■□□□□ 0.01
COL12A1Q99715 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC15.14■□□□□ 0.01
COL12A1Q99715 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC15.14■□□□□ 0.01
COL12A1Q99715 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL12A1Q99715 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL12A1Q99715 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
COL12A1Q99715 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
COL12A1Q99715 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC15.14■□□□□ 0.01
COL12A1Q99715 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL12A1Q99715 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL12A1Q99715 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC15.13■□□□□ 0.01
COL12A1Q99715 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL12A1Q99715 INE1-201ENST00000456273 945 ntBASIC15.13■□□□□ 0.01
COL12A1Q99715 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC15.13■□□□□ 0.01
COL12A1Q99715 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.13■□□□□ 0.01
COL12A1Q99715 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL12A1Q99715 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.13■□□□□ 0.01
COL12A1Q99715 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
COL12A1Q99715 PTGES2-AS1-201ENST00000443493 2100 ntBASIC15.13■□□□□ 0.01
COL12A1Q99715 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
COL12A1Q99715 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
COL12A1Q99715 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
COL12A1Q99715 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms