Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
LRCH3Q96II8 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LRCH3Q96II8 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.88■□□□□ 0.61
LRCH3Q96II8 AL355306.1-201ENST00000415580 579 ntBASIC18.88■□□□□ 0.61
LRCH3Q96II8 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.88■□□□□ 0.61
LRCH3Q96II8 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LRCH3Q96II8 CXCL1P1-201ENST00000502804 216 ntBASIC18.88■□□□□ 0.61
LRCH3Q96II8 AC092658.1-201ENST00000505836 891 ntBASIC18.88■□□□□ 0.61
LRCH3Q96II8 AC097493.3-201ENST00000509725 367 ntBASIC18.88■□□□□ 0.61
LRCH3Q96II8 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LRCH3Q96II8 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LRCH3Q96II8 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC18.88■□□□□ 0.61
LRCH3Q96II8 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LRCH3Q96II8 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LRCH3Q96II8 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.88■□□□□ 0.61
LRCH3Q96II8 AC008677.1-201ENST00000519230 1561 ntBASIC18.88■□□□□ 0.61
LRCH3Q96II8 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.88■□□□□ 0.61
LRCH3Q96II8 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
LRCH3Q96II8 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LRCH3Q96II8 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LRCH3Q96II8 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LRCH3Q96II8 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
LRCH3Q96II8 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LRCH3Q96II8 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
LRCH3Q96II8 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LRCH3Q96II8 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LRCH3Q96II8 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
LRCH3Q96II8 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LRCH3Q96II8 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
LRCH3Q96II8 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LRCH3Q96II8 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LRCH3Q96II8 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
LRCH3Q96II8 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LRCH3Q96II8 AL671277.1-201ENST00000429656 993 ntBASIC18.87■□□□□ 0.61
LRCH3Q96II8 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC18.87■□□□□ 0.61
LRCH3Q96II8 RBPMS2P1-201ENST00000437762 623 ntBASIC18.87■□□□□ 0.61
LRCH3Q96II8 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LRCH3Q96II8 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LRCH3Q96II8 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LRCH3Q96II8 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC18.87■□□□□ 0.61
LRCH3Q96II8 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
LRCH3Q96II8 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC18.87■□□□□ 0.61
LRCH3Q96II8 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LRCH3Q96II8 TSFM-210ENST00000550559 897 ntTSL 5 BASIC18.87■□□□□ 0.61
LRCH3Q96II8 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC18.87■□□□□ 0.61
LRCH3Q96II8 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LRCH3Q96II8 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LRCH3Q96II8 AL158211.3-201ENST00000607385 239 ntBASIC18.87■□□□□ 0.61
LRCH3Q96II8 Six3os1_5.1-201ENST00000611000 271 ntBASIC18.87■□□□□ 0.61
LRCH3Q96II8 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC18.87■□□□□ 0.61
LRCH3Q96II8 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
LRCH3Q96II8 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LRCH3Q96II8 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LRCH3Q96II8 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
LRCH3Q96II8 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LRCH3Q96II8 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LRCH3Q96II8 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LRCH3Q96II8 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
LRCH3Q96II8 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LRCH3Q96II8 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LRCH3Q96II8 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 MTMR9LP-203ENST00000426597 1545 ntBASIC18.86■□□□□ 0.61
LRCH3Q96II8 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LRCH3Q96II8 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LRCH3Q96II8 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LRCH3Q96II8 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LRCH3Q96II8 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 PTPA-220ENST00000436883 532 ntTSL 4 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LRCH3Q96II8 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 NAA38-206ENST00000576384 424 ntTSL 2 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 GGTLC5P-201ENST00000617623 998 ntBASIC18.86■□□□□ 0.61
LRCH3Q96II8 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LRCH3Q96II8 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
LRCH3Q96II8 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LRCH3Q96II8 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LRCH3Q96II8 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LRCH3Q96II8 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LRCH3Q96II8 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LRCH3Q96II8 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LRCH3Q96II8 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LRCH3Q96II8 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LRCH3Q96II8 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LRCH3Q96II8 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms