Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.36■□□□□ 0.21
DEPDC4Q8N2C3 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 YBX1P2-201ENST00000489612 999 ntBASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 NTF6B-201ENST00000591913 560 ntBASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 AC006011.2-201ENST00000621313 1158 ntBASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
DEPDC4Q8N2C3 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 AC117947.1-201ENST00000427448 529 ntBASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 HOMER2P1-201ENST00000455653 964 ntBASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 RNF146-204ENST00000476956 884 ntTSL 2 BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 AC022616.7-201ENST00000525383 220 ntBASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 NEK4P2-201ENST00000580004 1012 ntBASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 LINC01451-201ENST00000623792 534 ntBASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.34■□□□□ 0.21
DEPDC4Q8N2C3 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
DEPDC4Q8N2C3 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
DEPDC4Q8N2C3 RN7SL832P-201ENST00000607781 1756 ntBASIC16.33■□□□□ 0.21
DEPDC4Q8N2C3 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms