Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 AC027601.4-201ENST00000611259 610 ntBASIC19.43■□□□□ 0.7
CCDC60Q8IWA6 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC60Q8IWA6 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CCDC60Q8IWA6 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CCDC60Q8IWA6 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC60Q8IWA6 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC60Q8IWA6 AL135999.2-201ENST00000622438 1686 ntBASIC19.43■□□□□ 0.7
CCDC60Q8IWA6 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 FABP5-202ENST00000396359 986 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 MED15P5-201ENST00000423150 992 ntBASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 AC108751.1-201ENST00000490852 363 ntBASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 PGAM5P1-201ENST00000518923 814 ntBASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 TERC-201ENST00000602385 541 ntBASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
CCDC60Q8IWA6 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 LYSMD4-203ENST00000378904 2122 ntBASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 RPS15P9-201ENST00000494093 319 ntBASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 FAM197Y3-203ENST00000618346 717 ntBASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CCDC60Q8IWA6 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 AC007967.2-201ENST00000432613 625 ntBASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 AC108073.2-201ENST00000464002 357 ntBASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 PMS2P7-201ENST00000506558 1336 ntBASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 GPR89P-201ENST00000407924 1495 ntBASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC19.4■□□□□ 0.7
CCDC60Q8IWA6 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms