Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC10.91□□□□□ -0.66
LINC00643Q86TS7 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 RNF216P1-203ENST00000404404 2427 ntBASIC10.9□□□□□ -0.66
LINC00643Q86TS7 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 AC004817.3-201ENST00000602957 2129 ntBASIC10.9□□□□□ -0.66
LINC00643Q86TS7 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 AL731571.1-201ENST00000617058 5428 ntBASIC10.9□□□□□ -0.66
LINC00643Q86TS7 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 TSPY21P-201ENST00000433481 731 ntBASIC10.9□□□□□ -0.66
LINC00643Q86TS7 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 AC016396.2-201ENST00000562575 1417 ntBASIC10.9□□□□□ -0.66
LINC00643Q86TS7 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 TET3-201ENST00000305799 5174 ntTSL 5 BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
LINC00643Q86TS7 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC10.9□□□□□ -0.67
LINC00643Q86TS7 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC10.9□□□□□ -0.67
LINC00643Q86TS7 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC10.9□□□□□ -0.67
LINC00643Q86TS7 MTHFR-217ENST00000641820 1569 ntBASIC10.9□□□□□ -0.67
LINC00643Q86TS7 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.67
LINC00643Q86TS7 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC10.9□□□□□ -0.67
LINC00643Q86TS7 USP31-203ENST00000567975 2142 ntTSL 2 BASIC10.9□□□□□ -0.67
LINC00643Q86TS7 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC10.9□□□□□ -0.67
LINC00643Q86TS7 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC10.9□□□□□ -0.67
LINC00643Q86TS7 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC10.89□□□□□ -0.67
LINC00643Q86TS7 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.67
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms