Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 STK4-201ENST00000372801 2038 ntTSL 2 BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 GATB-205ENST00000508611 605 ntTSL 2 BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 AC026150.2-201ENST00000564693 1156 ntBASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 CD81-202ENST00000381036 880 ntTSL 3 BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 MADD-208ENST00000405573 1823 ntTSL 5 BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC11.65□□□□□ -0.54
VPS13DQ5THJ4 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC11.65□□□□□ -0.55
VPS13DQ5THJ4 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
VPS13DQ5THJ4 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
VPS13DQ5THJ4 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC11.65□□□□□ -0.55
VPS13DQ5THJ4 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC11.65□□□□□ -0.55
VPS13DQ5THJ4 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC11.65□□□□□ -0.55
VPS13DQ5THJ4 AC004890.2-204ENST00000481968 304 ntBASIC11.65□□□□□ -0.55
VPS13DQ5THJ4 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC11.65□□□□□ -0.55
VPS13DQ5THJ4 TSFM-210ENST00000550559 897 ntTSL 5 BASIC11.65□□□□□ -0.55
VPS13DQ5THJ4 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC11.65□□□□□ -0.55
VPS13DQ5THJ4 AC025048.6-201ENST00000634326 1161 ntBASIC11.65□□□□□ -0.55
VPS13DQ5THJ4 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC11.65□□□□□ -0.55
VPS13DQ5THJ4 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
VPS13DQ5THJ4 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC11.65□□□□□ -0.55
VPS13DQ5THJ4 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 GATD1-206ENST00000526325 756 ntTSL 5 BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 AC025678.2-201ENST00000562061 970 ntBASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 NME2P1-201ENST00000426182 414 ntBASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 AL008721.1-201ENST00000609964 604 ntBASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC11.64□□□□□ -0.55
VPS13DQ5THJ4 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 TAF8-206ENST00000472818 719 ntTSL 2 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC11.63□□□□□ -0.55
VPS13DQ5THJ4 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC11.63□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms