Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.22■□□□□ 0.35
PKNOX1P55347 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
PKNOX1P55347 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PKNOX1P55347 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PKNOX1P55347 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
PKNOX1P55347 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.22■□□□□ 0.35
PKNOX1P55347 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PKNOX1P55347 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PKNOX1P55347 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.22■□□□□ 0.35
PKNOX1P55347 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PKNOX1P55347 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PKNOX1P55347 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.22■□□□□ 0.35
PKNOX1P55347 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
PKNOX1P55347 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.22■□□□□ 0.35
PKNOX1P55347 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PKNOX1P55347 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PKNOX1P55347 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PKNOX1P55347 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PKNOX1P55347 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PKNOX1P55347 AC106886.4-201ENST00000623557 2502 ntBASIC17.22■□□□□ 0.35
PKNOX1P55347 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PKNOX1P55347 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PKNOX1P55347 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PKNOX1P55347 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.22■□□□□ 0.35
PKNOX1P55347 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.22■□□□□ 0.35
PKNOX1P55347 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
PKNOX1P55347 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.22■□□□□ 0.35
PKNOX1P55347 PCDHB19P-201ENST00000570871 2371 ntBASIC17.22■□□□□ 0.35
PKNOX1P55347 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.22■□□□□ 0.35
PKNOX1P55347 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PKNOX1P55347 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC17.21■□□□□ 0.35
PKNOX1P55347 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PKNOX1P55347 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
PKNOX1P55347 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PKNOX1P55347 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
PKNOX1P55347 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PKNOX1P55347 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PKNOX1P55347 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.21■□□□□ 0.35
PKNOX1P55347 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
PKNOX1P55347 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PKNOX1P55347 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PKNOX1P55347 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PKNOX1P55347 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PKNOX1P55347 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PKNOX1P55347 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.21■□□□□ 0.35
PKNOX1P55347 IGHGP-201ENST00000390555 1178 ntBASIC17.21■□□□□ 0.35
PKNOX1P55347 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
PKNOX1P55347 AC113347.1-201ENST00000413321 391 ntBASIC17.21■□□□□ 0.35
PKNOX1P55347 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
PKNOX1P55347 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.21■□□□□ 0.35
PKNOX1P55347 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PKNOX1P55347 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.21■□□□□ 0.35
PKNOX1P55347 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PKNOX1P55347 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
PKNOX1P55347 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.21■□□□□ 0.35
PKNOX1P55347 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PKNOX1P55347 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
PKNOX1P55347 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
PKNOX1P55347 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
PKNOX1P55347 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
PKNOX1P55347 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PKNOX1P55347 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
PKNOX1P55347 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PKNOX1P55347 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PKNOX1P55347 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.21■□□□□ 0.34
PKNOX1P55347 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.21■□□□□ 0.34
PKNOX1P55347 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
PKNOX1P55347 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
PKNOX1P55347 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.2■□□□□ 0.34
PKNOX1P55347 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PKNOX1P55347 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.2■□□□□ 0.34
PKNOX1P55347 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
PKNOX1P55347 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PKNOX1P55347 AC046158.3-201ENST00000624947 2558 ntBASIC17.2■□□□□ 0.34
PKNOX1P55347 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PKNOX1P55347 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PKNOX1P55347 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PKNOX1P55347 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PKNOX1P55347 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.2■□□□□ 0.34
PKNOX1P55347 AC005104.2-201ENST00000427818 678 ntBASIC17.2■□□□□ 0.34
PKNOX1P55347 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.2■□□□□ 0.34
PKNOX1P55347 YBX1P2-201ENST00000489612 999 ntBASIC17.2■□□□□ 0.34
PKNOX1P55347 AP003733.1-201ENST00000491725 852 ntBASIC17.2■□□□□ 0.34
PKNOX1P55347 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
PKNOX1P55347 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.2■□□□□ 0.34
PKNOX1P55347 AC005363.2-201ENST00000618631 242 ntBASIC17.2■□□□□ 0.34
PKNOX1P55347 AC066615.1-201ENST00000640911 628 ntBASIC17.2■□□□□ 0.34
PKNOX1P55347 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PKNOX1P55347 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PKNOX1P55347 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
PKNOX1P55347 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
PKNOX1P55347 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
PKNOX1P55347 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
PKNOX1P55347 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
PKNOX1P55347 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC17.2■□□□□ 0.34
PKNOX1P55347 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.2■□□□□ 0.34
PKNOX1P55347 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
PKNOX1P55347 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
PKNOX1P55347 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
PKNOX1P55347 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms