Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
FOXA3P55318 RARRES2P6-201ENST00000567333 442 ntBASIC13.21□□□□□ -0.29
FOXA3P55318 AC026271.3-201ENST00000571884 352 ntBASIC13.21□□□□□ -0.29
FOXA3P55318 MIR3180-5-201ENST00000583743 153 ntBASIC13.21□□□□□ -0.29
FOXA3P55318 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC13.21□□□□□ -0.29
FOXA3P55318 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC13.21□□□□□ -0.29
FOXA3P55318 AL353708.3-201ENST00000610272 989 ntBASIC13.21□□□□□ -0.29
FOXA3P55318 AC011298.2-201ENST00000617989 482 ntBASIC13.21□□□□□ -0.29
FOXA3P55318 INO80E-214ENST00000620599 515 ntTSL 2 BASIC13.21□□□□□ -0.29
FOXA3P55318 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC13.21□□□□□ -0.29
FOXA3P55318 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC13.21□□□□□ -0.29
FOXA3P55318 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
FOXA3P55318 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC13.21□□□□□ -0.29
FOXA3P55318 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
FOXA3P55318 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
FOXA3P55318 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC13.21□□□□□ -0.3
FOXA3P55318 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
FOXA3P55318 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
FOXA3P55318 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
FOXA3P55318 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
FOXA3P55318 REXO1L11P-201ENST00000620964 1927 ntBASIC13.21□□□□□ -0.3
FOXA3P55318 AC132938.6-201ENST00000623828 1655 ntBASIC13.21□□□□□ -0.3
FOXA3P55318 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
FOXA3P55318 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
FOXA3P55318 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC13.21□□□□□ -0.3
FOXA3P55318 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
FOXA3P55318 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 GCK-209ENST00000616242 2260 ntTSL 5 BASIC13.2□□□□□ -0.3
FOXA3P55318 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 AC060834.1-201ENST00000443027 2032 ntBASIC13.2□□□□□ -0.3
FOXA3P55318 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA3P55318 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC13.2□□□□□ -0.3
FOXA3P55318 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA3P55318 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC13.2□□□□□ -0.3
FOXA3P55318 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC13.2□□□□□ -0.3
FOXA3P55318 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC13.2□□□□□ -0.3
FOXA3P55318 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC13.2□□□□□ -0.3
FOXA3P55318 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
FOXA3P55318 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC13.2□□□□□ -0.3
FOXA3P55318 KSR1P1-201ENST00000446298 240 ntBASIC13.2□□□□□ -0.3
FOXA3P55318 FAM207BP-201ENST00000447172 505 ntBASIC13.2□□□□□ -0.3
FOXA3P55318 AC008040.2-201ENST00000461049 708 ntBASIC13.2□□□□□ -0.3
FOXA3P55318 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA3P55318 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC13.2□□□□□ -0.3
FOXA3P55318 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC13.2□□□□□ -0.3
FOXA3P55318 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC13.2□□□□□ -0.3
FOXA3P55318 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA3P55318 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA3P55318 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC13.2□□□□□ -0.3
FOXA3P55318 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
FOXA3P55318 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA3P55318 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA3P55318 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC13.2□□□□□ -0.3
FOXA3P55318 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
FOXA3P55318 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA3P55318 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
FOXA3P55318 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA3P55318 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
FOXA3P55318 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA3P55318 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC13.19□□□□□ -0.3
FOXA3P55318 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC13.19□□□□□ -0.3
FOXA3P55318 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
FOXA3P55318 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
FOXA3P55318 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA3P55318 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA3P55318 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA3P55318 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA3P55318 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA3P55318 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC13.19□□□□□ -0.3
FOXA3P55318 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
FOXA3P55318 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC13.19□□□□□ -0.3
FOXA3P55318 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA3P55318 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC13.19□□□□□ -0.3
FOXA3P55318 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
FOXA3P55318 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms