Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMK1P53667 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIMK1P53667 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIMK1P53667 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMK1P53667 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.29■□□□□ 0.36
LIMK1P53667 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
LIMK1P53667 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
LIMK1P53667 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.29■□□□□ 0.36
LIMK1P53667 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.29■□□□□ 0.36
LIMK1P53667 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
LIMK1P53667 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMK1P53667 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.29■□□□□ 0.36
LIMK1P53667 AC004817.3-201ENST00000602957 2129 ntBASIC17.29■□□□□ 0.36
LIMK1P53667 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17.29■□□□□ 0.36
LIMK1P53667 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMK1P53667 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMK1P53667 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
LIMK1P53667 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMK1P53667 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIMK1P53667 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.28■□□□□ 0.36
LIMK1P53667 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIMK1P53667 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
LIMK1P53667 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.28■□□□□ 0.36
LIMK1P53667 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMK1P53667 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMK1P53667 IGLL3P-201ENST00000412472 434 ntBASIC17.28■□□□□ 0.36
LIMK1P53667 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.28■□□□□ 0.36
LIMK1P53667 FAM86GP-201ENST00000448322 971 ntBASIC17.28■□□□□ 0.36
LIMK1P53667 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.28■□□□□ 0.36
LIMK1P53667 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC17.28■□□□□ 0.36
LIMK1P53667 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.28■□□□□ 0.36
LIMK1P53667 KRT19P2-202ENST00000557173 1012 ntBASIC17.28■□□□□ 0.36
LIMK1P53667 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC17.28■□□□□ 0.36
LIMK1P53667 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.28■□□□□ 0.36
LIMK1P53667 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC17.28■□□□□ 0.36
LIMK1P53667 AC012645.4-201ENST00000610691 1061 ntBASIC17.28■□□□□ 0.36
LIMK1P53667 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
LIMK1P53667 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
LIMK1P53667 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
LIMK1P53667 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
LIMK1P53667 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIMK1P53667 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIMK1P53667 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMK1P53667 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
LIMK1P53667 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
LIMK1P53667 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.27■□□□□ 0.36
LIMK1P53667 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
LIMK1P53667 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC17.27■□□□□ 0.36
LIMK1P53667 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
LIMK1P53667 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC17.27■□□□□ 0.36
LIMK1P53667 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMK1P53667 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMK1P53667 NEK7-201ENST00000367383 586 ntTSL 2 BASIC17.27■□□□□ 0.36
LIMK1P53667 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.27■□□□□ 0.36
LIMK1P53667 AC004461.1-201ENST00000412461 403 ntBASIC17.27■□□□□ 0.36
LIMK1P53667 AC074386.1-202ENST00000463561 864 ntBASIC17.27■□□□□ 0.36
LIMK1P53667 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIMK1P53667 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC17.27■□□□□ 0.36
LIMK1P53667 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.27■□□□□ 0.36
LIMK1P53667 AC005225.4-201ENST00000557330 545 ntBASIC17.27■□□□□ 0.36
LIMK1P53667 AC087641.1-201ENST00000557561 1021 ntBASIC17.27■□□□□ 0.36
LIMK1P53667 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.27■□□□□ 0.36
LIMK1P53667 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIMK1P53667 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.27■□□□□ 0.36
LIMK1P53667 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
LIMK1P53667 AC105339.1-204ENST00000636249 355 ntBASIC17.27■□□□□ 0.36
LIMK1P53667 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMK1P53667 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LIMK1P53667 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
LIMK1P53667 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
LIMK1P53667 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
LIMK1P53667 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
LIMK1P53667 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.26■□□□□ 0.35
LIMK1P53667 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
LIMK1P53667 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMK1P53667 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMK1P53667 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMK1P53667 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIMK1P53667 BCAR1-209ENST00000546196 1340 ntBASIC17.26■□□□□ 0.35
LIMK1P53667 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMK1P53667 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.26■□□□□ 0.35
LIMK1P53667 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIMK1P53667 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
LIMK1P53667 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.26■□□□□ 0.35
LIMK1P53667 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC17.26■□□□□ 0.35
LIMK1P53667 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
LIMK1P53667 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.26■□□□□ 0.35
LIMK1P53667 CBR1-202ENST00000399191 838 ntTSL 3 BASIC17.26■□□□□ 0.35
LIMK1P53667 AC096633.1-201ENST00000422446 749 ntBASIC17.26■□□□□ 0.35
LIMK1P53667 AC103564.2-201ENST00000432853 1299 ntBASIC17.26■□□□□ 0.35
LIMK1P53667 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.26■□□□□ 0.35
LIMK1P53667 RHOQP3-201ENST00000437982 621 ntBASIC17.26■□□□□ 0.35
LIMK1P53667 AC023141.5-201ENST00000458585 616 ntBASIC17.26■□□□□ 0.35
LIMK1P53667 AC067863.1-201ENST00000494933 530 ntBASIC17.26■□□□□ 0.35
LIMK1P53667 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.26■□□□□ 0.35
LIMK1P53667 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.26■□□□□ 0.35
LIMK1P53667 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.26■□□□□ 0.35
LIMK1P53667 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.26■□□□□ 0.35
LIMK1P53667 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.26■□□□□ 0.35
LIMK1P53667 NCF1C-201ENST00000438382 1427 ntBASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms