Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
CLCN3P51790 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLCN3P51790 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLCN3P51790 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLCN3P51790 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
CLCN3P51790 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
CLCN3P51790 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CLCN3P51790 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CLCN3P51790 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC19.21■□□□□ 0.67
CLCN3P51790 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC19.21■□□□□ 0.67
CLCN3P51790 RNA5SP416-201ENST00000516838 111 ntBASIC19.21■□□□□ 0.67
CLCN3P51790 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC19.21■□□□□ 0.67
CLCN3P51790 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.21■□□□□ 0.67
CLCN3P51790 AC064836.3-201ENST00000607928 673 ntBASIC19.21■□□□□ 0.67
CLCN3P51790 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.21■□□□□ 0.67
CLCN3P51790 AC139530.3-201ENST00000620344 690 ntBASIC19.21■□□□□ 0.67
CLCN3P51790 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLCN3P51790 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.21■□□□□ 0.67
CLCN3P51790 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLCN3P51790 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC19.21■□□□□ 0.67
CLCN3P51790 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLCN3P51790 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.21■□□□□ 0.67
CLCN3P51790 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC19.21■□□□□ 0.67
CLCN3P51790 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLCN3P51790 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
CLCN3P51790 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
CLCN3P51790 AC046185.3-201ENST00000623228 1824 ntBASIC19.21■□□□□ 0.67
CLCN3P51790 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN3P51790 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN3P51790 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN3P51790 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN3P51790 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CLCN3P51790 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN3P51790 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN3P51790 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN3P51790 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN3P51790 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN3P51790 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN3P51790 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN3P51790 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19.2■□□□□ 0.66
CLCN3P51790 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC19.2■□□□□ 0.66
CLCN3P51790 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN3P51790 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC19.2■□□□□ 0.66
CLCN3P51790 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.2■□□□□ 0.66
CLCN3P51790 IGHV3-65-201ENST00000523210 341 ntBASIC19.2■□□□□ 0.66
CLCN3P51790 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC19.2■□□□□ 0.66
CLCN3P51790 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.2■□□□□ 0.66
CLCN3P51790 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC19.2■□□□□ 0.66
CLCN3P51790 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC19.2■□□□□ 0.66
CLCN3P51790 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN3P51790 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.2■□□□□ 0.66
CLCN3P51790 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.2■□□□□ 0.66
CLCN3P51790 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
CLCN3P51790 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC19.2■□□□□ 0.66
CLCN3P51790 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CLCN3P51790 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.2■□□□□ 0.66
CLCN3P51790 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN3P51790 AL390961.4-201ENST00000623958 2535 ntBASIC19.2■□□□□ 0.66
CLCN3P51790 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN3P51790 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
CLCN3P51790 LINC00304-203ENST00000565008 1864 ntBASIC19.2■□□□□ 0.66
CLCN3P51790 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC19.2■□□□□ 0.66
CLCN3P51790 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CLCN3P51790 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC19.19■□□□□ 0.66
CLCN3P51790 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
CLCN3P51790 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC19.19■□□□□ 0.66
CLCN3P51790 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC19.19■□□□□ 0.66
CLCN3P51790 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN3P51790 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN3P51790 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN3P51790 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN3P51790 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN3P51790 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC19.19■□□□□ 0.66
CLCN3P51790 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CLCN3P51790 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN3P51790 PTCHD3P3-201ENST00000403073 906 ntBASIC19.19■□□□□ 0.66
CLCN3P51790 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN3P51790 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC19.19■□□□□ 0.66
CLCN3P51790 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC19.19■□□□□ 0.66
CLCN3P51790 MIR4751-201ENST00000578027 74 ntBASIC19.19■□□□□ 0.66
CLCN3P51790 AC008667.4-201ENST00000607370 168 ntBASIC19.19■□□□□ 0.66
CLCN3P51790 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19.19■□□□□ 0.66
CLCN3P51790 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC19.19■□□□□ 0.66
CLCN3P51790 AL805961.1-202ENST00000641562 540 ntBASIC19.19■□□□□ 0.66
CLCN3P51790 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN3P51790 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN3P51790 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.19■□□□□ 0.66
CLCN3P51790 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN3P51790 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN3P51790 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN3P51790 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLCN3P51790 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
CLCN3P51790 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC19.18■□□□□ 0.66
CLCN3P51790 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC19.18■□□□□ 0.66
CLCN3P51790 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLCN3P51790 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLCN3P51790 AL135999.2-201ENST00000622438 1686 ntBASIC19.18■□□□□ 0.66
CLCN3P51790 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLCN3P51790 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLCN3P51790 GPR89P-201ENST00000407924 1495 ntBASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms