Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
SOX3P41225 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.53■□□□□ 0.24
SOX3P41225 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
SOX3P41225 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SOX3P41225 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX3P41225 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX3P41225 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
SOX3P41225 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX3P41225 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
SOX3P41225 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SOX3P41225 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX3P41225 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX3P41225 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.52■□□□□ 0.24
SOX3P41225 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
SOX3P41225 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC16.52■□□□□ 0.24
SOX3P41225 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX3P41225 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX3P41225 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.52■□□□□ 0.24
SOX3P41225 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SOX3P41225 KRT18P31-201ENST00000506277 1292 ntBASIC16.52■□□□□ 0.24
SOX3P41225 UNC93B7-201ENST00000509439 705 ntBASIC16.52■□□□□ 0.24
SOX3P41225 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.52■□□□□ 0.24
SOX3P41225 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.52■□□□□ 0.24
SOX3P41225 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.52■□□□□ 0.24
SOX3P41225 BNIP3P18-201ENST00000593976 575 ntBASIC16.52■□□□□ 0.24
SOX3P41225 IFNL4P1-201ENST00000607083 540 ntBASIC16.52■□□□□ 0.24
SOX3P41225 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC16.52■□□□□ 0.23
SOX3P41225 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SOX3P41225 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.52■□□□□ 0.23
SOX3P41225 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SOX3P41225 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.52■□□□□ 0.23
SOX3P41225 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
SOX3P41225 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
SOX3P41225 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
SOX3P41225 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
SOX3P41225 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.52■□□□□ 0.23
SOX3P41225 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SOX3P41225 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SOX3P41225 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC16.52■□□□□ 0.23
SOX3P41225 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.51■□□□□ 0.23
SOX3P41225 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.51■□□□□ 0.23
SOX3P41225 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.51■□□□□ 0.23
SOX3P41225 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.51■□□□□ 0.23
SOX3P41225 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.51■□□□□ 0.23
SOX3P41225 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.51■□□□□ 0.23
SOX3P41225 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.51■□□□□ 0.23
SOX3P41225 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SOX3P41225 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.51■□□□□ 0.23
SOX3P41225 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.51■□□□□ 0.23
SOX3P41225 AC022211.2-201ENST00000585075 2527 ntBASIC16.51■□□□□ 0.23
SOX3P41225 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
SOX3P41225 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
SOX3P41225 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.51■□□□□ 0.23
SOX3P41225 AC096582.2-201ENST00000510860 516 ntBASIC16.51■□□□□ 0.23
SOX3P41225 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.51■□□□□ 0.23
SOX3P41225 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.51■□□□□ 0.23
SOX3P41225 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.51■□□□□ 0.23
SOX3P41225 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
SOX3P41225 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SOX3P41225 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.51■□□□□ 0.23
SOX3P41225 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
SOX3P41225 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.51■□□□□ 0.23
SOX3P41225 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.51■□□□□ 0.23
SOX3P41225 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SOX3P41225 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SOX3P41225 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms