Protein–RNA interactions for Protein: P35914

HMGCL, Hydroxymethylglutaryl-CoA lyase, mitochondrial, humanhuman

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCLP35914 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC17.44■□□□□ 0.38
HMGCLP35914 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGCLP35914 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.44■□□□□ 0.38
HMGCLP35914 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGCLP35914 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HMGCLP35914 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCLP35914 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
HMGCLP35914 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCLP35914 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGCLP35914 CROCCP2-202ENST00000412962 2773 ntBASIC17.43■□□□□ 0.38
HMGCLP35914 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HMGCLP35914 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCLP35914 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGCLP35914 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCLP35914 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCLP35914 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCLP35914 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGCLP35914 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
HMGCLP35914 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCLP35914 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
HMGCLP35914 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGCLP35914 KRT126P-201ENST00000549467 1181 ntBASIC17.43■□□□□ 0.38
HMGCLP35914 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.43■□□□□ 0.38
HMGCLP35914 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCLP35914 MTDHP3-201ENST00000594186 672 ntBASIC17.43■□□□□ 0.38
HMGCLP35914 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCLP35914 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGCLP35914 AC141586.5-201ENST00000624546 2050 ntBASIC17.43■□□□□ 0.38
HMGCLP35914 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCLP35914 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
HMGCLP35914 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCLP35914 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGCLP35914 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCLP35914 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGCLP35914 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCLP35914 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCLP35914 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGCLP35914 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCLP35914 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCLP35914 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
HMGCLP35914 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCLP35914 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCLP35914 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGCLP35914 SIGLEC30P-201ENST00000455569 941 ntBASIC17.42■□□□□ 0.38
HMGCLP35914 AF238378.1-201ENST00000526806 358 ntBASIC17.42■□□□□ 0.38
HMGCLP35914 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCLP35914 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.42■□□□□ 0.38
HMGCLP35914 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.42■□□□□ 0.38
HMGCLP35914 AC008608.2-201ENST00000606089 416 ntBASIC17.42■□□□□ 0.38
HMGCLP35914 AL139288.1-201ENST00000623748 933 ntBASIC17.42■□□□□ 0.38
HMGCLP35914 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.42■□□□□ 0.38
HMGCLP35914 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCLP35914 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCLP35914 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCLP35914 AC148477.5-201ENST00000625164 1645 ntBASIC17.42■□□□□ 0.38
HMGCLP35914 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
HMGCLP35914 AC090340.1-201ENST00000620778 4980 ntBASIC17.42■□□□□ 0.38
HMGCLP35914 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
HMGCLP35914 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.42■□□□□ 0.38
HMGCLP35914 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGCLP35914 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCLP35914 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGCLP35914 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HMGCLP35914 PAN3-AS1-201ENST00000563843 1351 ntBASIC17.41■□□□□ 0.38
HMGCLP35914 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
HMGCLP35914 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17.41■□□□□ 0.38
HMGCLP35914 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.41■□□□□ 0.38
HMGCLP35914 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.41■□□□□ 0.38
HMGCLP35914 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
HMGCLP35914 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGCLP35914 PRYP5-201ENST00000451909 266 ntBASIC17.41■□□□□ 0.38
HMGCLP35914 FGFR3P6-201ENST00000457012 610 ntBASIC17.41■□□□□ 0.38
HMGCLP35914 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.41■□□□□ 0.38
HMGCLP35914 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
HMGCLP35914 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.41■□□□□ 0.38
HMGCLP35914 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
HMGCLP35914 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
HMGCLP35914 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
HMGCLP35914 AL356309.3-201ENST00000624132 1934 ntBASIC17.41■□□□□ 0.38
HMGCLP35914 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGCLP35914 AC139713.2-201ENST00000641328 2723 ntBASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms