Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CIITAP33076 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC19.7■□□□□ 0.74
CIITAP33076 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
CIITAP33076 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CIITAP33076 NCF1C-201ENST00000438382 1427 ntBASIC19.7■□□□□ 0.74
CIITAP33076 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
CIITAP33076 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CIITAP33076 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CIITAP33076 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CIITAP33076 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.7■□□□□ 0.74
CIITAP33076 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
CIITAP33076 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CIITAP33076 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CIITAP33076 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.7■□□□□ 0.74
CIITAP33076 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
CIITAP33076 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CIITAP33076 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.7■□□□□ 0.74
CIITAP33076 SDCCAG3P1-201ENST00000589292 1150 ntBASIC19.7■□□□□ 0.74
CIITAP33076 PRKN-208ENST00000610470 531 ntTSL 2 BASIC19.7■□□□□ 0.74
CIITAP33076 PRKN-209ENST00000612485 225 ntTSL 5 BASIC19.7■□□□□ 0.74
CIITAP33076 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
CIITAP33076 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CIITAP33076 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.7■□□□□ 0.74
CIITAP33076 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.7■□□□□ 0.74
CIITAP33076 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC19.7■□□□□ 0.74
CIITAP33076 AC097637.2-201ENST00000624096 1997 ntBASIC19.7■□□□□ 0.74
CIITAP33076 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
CIITAP33076 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CIITAP33076 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CIITAP33076 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CIITAP33076 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CIITAP33076 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.69■□□□□ 0.74
CIITAP33076 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CIITAP33076 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
CIITAP33076 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CIITAP33076 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.69■□□□□ 0.74
CIITAP33076 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CIITAP33076 AC073621.1-201ENST00000392730 636 ntBASIC19.69■□□□□ 0.74
CIITAP33076 LINC00982-205ENST00000420957 435 ntBASIC19.69■□□□□ 0.74
CIITAP33076 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.69■□□□□ 0.74
CIITAP33076 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC19.69■□□□□ 0.74
CIITAP33076 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.69■□□□□ 0.74
CIITAP33076 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC19.69■□□□□ 0.74
CIITAP33076 AL353135.1-201ENST00000606729 504 ntBASIC19.69■□□□□ 0.74
CIITAP33076 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
CIITAP33076 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC19.69■□□□□ 0.74
CIITAP33076 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CIITAP33076 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CIITAP33076 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CIITAP33076 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.68■□□□□ 0.74
CIITAP33076 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CIITAP33076 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CIITAP33076 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CIITAP33076 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CIITAP33076 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.68■□□□□ 0.74
CIITAP33076 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CIITAP33076 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.68■□□□□ 0.74
CIITAP33076 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC19.68■□□□□ 0.74
CIITAP33076 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.68■□□□□ 0.74
CIITAP33076 ARTN-206ENST00000472435 402 ntTSL 3 BASIC19.68■□□□□ 0.74
CIITAP33076 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC19.68■□□□□ 0.74
CIITAP33076 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC19.68■□□□□ 0.74
CIITAP33076 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
CIITAP33076 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC19.68■□□□□ 0.74
CIITAP33076 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC19.68■□□□□ 0.74
CIITAP33076 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC19.68■□□□□ 0.74
CIITAP33076 AC006557.2-201ENST00000592985 1240 ntBASIC19.68■□□□□ 0.74
CIITAP33076 AL139424.1-201ENST00000607572 797 ntBASIC19.68■□□□□ 0.74
CIITAP33076 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CIITAP33076 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.68■□□□□ 0.74
CIITAP33076 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CIITAP33076 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC19.68■□□□□ 0.74
CIITAP33076 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CIITAP33076 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.68■□□□□ 0.74
CIITAP33076 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CIITAP33076 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CIITAP33076 AC243591.1-201ENST00000452967 1364 ntBASIC19.68■□□□□ 0.74
CIITAP33076 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CIITAP33076 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CIITAP33076 LINC00896-202ENST00000609602 2128 ntBASIC19.67■□□□□ 0.74
CIITAP33076 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CIITAP33076 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CIITAP33076 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CIITAP33076 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CIITAP33076 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CIITAP33076 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC19.67■□□□□ 0.74
CIITAP33076 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC19.67■□□□□ 0.74
CIITAP33076 ETFA-208ENST00000559602 792 ntTSL 3 BASIC19.67■□□□□ 0.74
CIITAP33076 AC105339.3-201ENST00000560043 636 ntBASIC19.67■□□□□ 0.74
CIITAP33076 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC19.67■□□□□ 0.74
CIITAP33076 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CIITAP33076 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.67■□□□□ 0.74
CIITAP33076 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC19.67■□□□□ 0.74
CIITAP33076 AC116407.3-201ENST00000623905 1129 ntBASIC19.67■□□□□ 0.74
CIITAP33076 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CIITAP33076 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CIITAP33076 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CIITAP33076 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CIITAP33076 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CIITAP33076 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms