Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TIMM8BP1-201ENST00000452384 211 ntBASIC16.66■□□□□ 0.26
COL5A1P20908 SLC25A6P2-201ENST00000497974 877 ntBASIC16.66■□□□□ 0.26
COL5A1P20908 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.66■□□□□ 0.26
COL5A1P20908 AL135744.1-201ENST00000565098 629 ntBASIC16.66■□□□□ 0.26
COL5A1P20908 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.66■□□□□ 0.26
COL5A1P20908 REXO1L9P-201ENST00000604264 2108 ntBASIC16.66■□□□□ 0.26
COL5A1P20908 AC026120.1-201ENST00000611536 926 ntBASIC16.66■□□□□ 0.26
COL5A1P20908 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL5A1P20908 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL5A1P20908 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL5A1P20908 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.66■□□□□ 0.26
COL5A1P20908 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC16.66■□□□□ 0.26
COL5A1P20908 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.66■□□□□ 0.26
COL5A1P20908 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL5A1P20908 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.66■□□□□ 0.26
COL5A1P20908 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL5A1P20908 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.66■□□□□ 0.26
COL5A1P20908 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.66■□□□□ 0.26
COL5A1P20908 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.66■□□□□ 0.26
COL5A1P20908 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.66■□□□□ 0.26
COL5A1P20908 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.66■□□□□ 0.26
COL5A1P20908 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC16.66■□□□□ 0.26
COL5A1P20908 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
COL5A1P20908 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
COL5A1P20908 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.66■□□□□ 0.26
COL5A1P20908 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.66■□□□□ 0.26
COL5A1P20908 KRT8P48-201ENST00000515599 1220 ntBASIC16.66■□□□□ 0.26
COL5A1P20908 AC107918.2-201ENST00000530817 355 ntBASIC16.66■□□□□ 0.26
COL5A1P20908 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL5A1P20908 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.66■□□□□ 0.26
COL5A1P20908 AC051619.7-201ENST00000568314 623 ntBASIC16.66■□□□□ 0.26
COL5A1P20908 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
COL5A1P20908 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.66■□□□□ 0.26
COL5A1P20908 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL5A1P20908 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL5A1P20908 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL5A1P20908 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
COL5A1P20908 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL5A1P20908 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL5A1P20908 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL5A1P20908 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
COL5A1P20908 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
COL5A1P20908 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
COL5A1P20908 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.65■□□□□ 0.26
COL5A1P20908 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL5A1P20908 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
COL5A1P20908 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL5A1P20908 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL5A1P20908 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL5A1P20908 AC002056.1-201ENST00000395613 760 ntBASIC16.65■□□□□ 0.26
COL5A1P20908 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL5A1P20908 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.65■□□□□ 0.26
COL5A1P20908 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL5A1P20908 AC069335.1-201ENST00000489972 472 ntBASIC16.65■□□□□ 0.26
COL5A1P20908 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.65■□□□□ 0.26
COL5A1P20908 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.65■□□□□ 0.26
COL5A1P20908 AL390955.2-201ENST00000603032 514 ntBASIC16.65■□□□□ 0.26
COL5A1P20908 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL5A1P20908 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
COL5A1P20908 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.65■□□□□ 0.26
COL5A1P20908 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.65■□□□□ 0.26
COL5A1P20908 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC16.65■□□□□ 0.26
COL5A1P20908 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.65■□□□□ 0.26
COL5A1P20908 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
COL5A1P20908 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL5A1P20908 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL5A1P20908 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
COL5A1P20908 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.64■□□□□ 0.25
COL5A1P20908 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL5A1P20908 RN7SL589P-201ENST00000481268 310 ntBASIC16.64■□□□□ 0.25
COL5A1P20908 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.64■□□□□ 0.25
COL5A1P20908 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.64■□□□□ 0.25
COL5A1P20908 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.64■□□□□ 0.25
COL5A1P20908 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL5A1P20908 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.64■□□□□ 0.25
COL5A1P20908 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL5A1P20908 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL5A1P20908 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC16.64■□□□□ 0.25
COL5A1P20908 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.64■□□□□ 0.25
COL5A1P20908 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL5A1P20908 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL5A1P20908 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
COL5A1P20908 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16.64■□□□□ 0.25
COL5A1P20908 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL5A1P20908 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL5A1P20908 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL5A1P20908 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL5A1P20908 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL5A1P20908 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL5A1P20908 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL5A1P20908 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.64■□□□□ 0.25
COL5A1P20908 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL5A1P20908 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL5A1P20908 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.63■□□□□ 0.25
COL5A1P20908 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
COL5A1P20908 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC16.63■□□□□ 0.25
COL5A1P20908 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
COL5A1P20908 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL5A1P20908 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL5A1P20908 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms