Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A3P12111 AC141586.3-201ENST00000562166 1838 ntBASIC18.05■□□□□ 0.48
COL6A3P12111 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
COL6A3P12111 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL6A3P12111 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.04■□□□□ 0.48
COL6A3P12111 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A3P12111 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A3P12111 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A3P12111 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.04■□□□□ 0.48
COL6A3P12111 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.04■□□□□ 0.48
COL6A3P12111 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A3P12111 MIR1247-201ENST00000408206 136 ntBASIC18.04■□□□□ 0.48
COL6A3P12111 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC18.04■□□□□ 0.48
COL6A3P12111 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A3P12111 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC18.04■□□□□ 0.48
COL6A3P12111 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A3P12111 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
COL6A3P12111 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC18.04■□□□□ 0.48
COL6A3P12111 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
COL6A3P12111 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A3P12111 MPRIPP1-201ENST00000452433 1089 ntBASIC18.04■□□□□ 0.48
COL6A3P12111 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
COL6A3P12111 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC18.04■□□□□ 0.48
COL6A3P12111 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
COL6A3P12111 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A3P12111 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.04■□□□□ 0.48
COL6A3P12111 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A3P12111 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A3P12111 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A3P12111 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.04■□□□□ 0.48
COL6A3P12111 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC18.04■□□□□ 0.48
COL6A3P12111 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A3P12111 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
COL6A3P12111 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC18.03■□□□□ 0.48
COL6A3P12111 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC18.03■□□□□ 0.48
COL6A3P12111 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC18.03■□□□□ 0.48
COL6A3P12111 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC18.03■□□□□ 0.48
COL6A3P12111 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.03■□□□□ 0.48
COL6A3P12111 KRT8P19-201ENST00000551916 1455 ntBASIC18.03■□□□□ 0.48
COL6A3P12111 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC18.03■□□□□ 0.48
COL6A3P12111 LINC01006-201ENST00000333319 2292 ntBASIC18.03■□□□□ 0.48
COL6A3P12111 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
COL6A3P12111 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.03■□□□□ 0.48
COL6A3P12111 AC103564.2-201ENST00000432853 1299 ntBASIC18.03■□□□□ 0.48
COL6A3P12111 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
COL6A3P12111 AGER-214ENST00000538695 487 ntTSL 2 BASIC18.03■□□□□ 0.48
COL6A3P12111 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC18.03■□□□□ 0.48
COL6A3P12111 RN7SL219P-201ENST00000582872 296 ntBASIC18.03■□□□□ 0.48
COL6A3P12111 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC18.03■□□□□ 0.48
COL6A3P12111 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
COL6A3P12111 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC18.03■□□□□ 0.48
COL6A3P12111 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
COL6A3P12111 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 GPAA1P2-201ENST00000417923 928 ntBASIC18.03■□□□□ 0.48
COL6A3P12111 IGHJ2P-201ENST00000454480 60 ntBASIC18.03■□□□□ 0.48
COL6A3P12111 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC18.03■□□□□ 0.48
COL6A3P12111 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC18.03■□□□□ 0.48
COL6A3P12111 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC18.03■□□□□ 0.48
COL6A3P12111 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.03■□□□□ 0.48
COL6A3P12111 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
COL6A3P12111 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL6A3P12111 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL6A3P12111 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC18.02■□□□□ 0.48
COL6A3P12111 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC18.02■□□□□ 0.48
COL6A3P12111 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
COL6A3P12111 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC18.02■□□□□ 0.48
COL6A3P12111 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC18.02■□□□□ 0.48
COL6A3P12111 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC18.02■□□□□ 0.48
COL6A3P12111 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC18.02■□□□□ 0.48
COL6A3P12111 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
COL6A3P12111 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.02■□□□□ 0.48
COL6A3P12111 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC18.02■□□□□ 0.48
COL6A3P12111 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
COL6A3P12111 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
COL6A3P12111 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC18.02■□□□□ 0.48
COL6A3P12111 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC18.02■□□□□ 0.48
COL6A3P12111 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.02■□□□□ 0.48
COL6A3P12111 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC18.02■□□□□ 0.48
COL6A3P12111 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms