Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL2A1P02458 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL2A1P02458 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC20.28■□□□□ 0.84
COL2A1P02458 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL2A1P02458 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.28■□□□□ 0.84
COL2A1P02458 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL2A1P02458 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL2A1P02458 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.28■□□□□ 0.84
COL2A1P02458 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL2A1P02458 TSEN15P1-201ENST00000423257 515 ntBASIC20.28■□□□□ 0.84
COL2A1P02458 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC20.28■□□□□ 0.84
COL2A1P02458 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC20.28■□□□□ 0.84
COL2A1P02458 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
COL2A1P02458 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC20.28■□□□□ 0.84
COL2A1P02458 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL2A1P02458 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL2A1P02458 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC20.27■□□□□ 0.84
COL2A1P02458 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL2A1P02458 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC20.27■□□□□ 0.84
COL2A1P02458 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
COL2A1P02458 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
COL2A1P02458 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL2A1P02458 PNMT-202ENST00000394246 821 ntTSL 2 BASIC20.27■□□□□ 0.84
COL2A1P02458 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC20.27■□□□□ 0.84
COL2A1P02458 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC20.27■□□□□ 0.84
COL2A1P02458 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
COL2A1P02458 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
COL2A1P02458 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
COL2A1P02458 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
COL2A1P02458 AC105339.1-204ENST00000636249 355 ntBASIC20.27■□□□□ 0.84
COL2A1P02458 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC20.27■□□□□ 0.84
COL2A1P02458 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL2A1P02458 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC20.27■□□□□ 0.83
COL2A1P02458 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20.27■□□□□ 0.83
COL2A1P02458 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.27■□□□□ 0.83
COL2A1P02458 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
COL2A1P02458 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL2A1P02458 AC135050.7-201ENST00000624508 2218 ntBASIC20.26■□□□□ 0.83
COL2A1P02458 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC20.26■□□□□ 0.83
COL2A1P02458 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL2A1P02458 NME9-203ENST00000383180 2133 ntTSL 2 BASIC20.26■□□□□ 0.83
COL2A1P02458 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL2A1P02458 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL2A1P02458 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
COL2A1P02458 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
COL2A1P02458 CBR1-202ENST00000399191 838 ntTSL 3 BASIC20.26■□□□□ 0.83
COL2A1P02458 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL2A1P02458 AL355306.1-201ENST00000415580 579 ntBASIC20.26■□□□□ 0.83
COL2A1P02458 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL2A1P02458 MMP17-203ENST00000535004 719 ntTSL 3 BASIC20.26■□□□□ 0.83
COL2A1P02458 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC20.26■□□□□ 0.83
COL2A1P02458 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL2A1P02458 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL2A1P02458 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL2A1P02458 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL2A1P02458 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC20.26■□□□□ 0.83
COL2A1P02458 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL2A1P02458 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC20.25■□□□□ 0.83
COL2A1P02458 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
COL2A1P02458 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
COL2A1P02458 SLC25A1P3-201ENST00000395415 828 ntBASIC20.25■□□□□ 0.83
COL2A1P02458 AC004461.1-201ENST00000412461 403 ntBASIC20.25■□□□□ 0.83
COL2A1P02458 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC20.25■□□□□ 0.83
COL2A1P02458 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC20.25■□□□□ 0.83
COL2A1P02458 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL2A1P02458 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC20.25■□□□□ 0.83
COL2A1P02458 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC20.25■□□□□ 0.83
COL2A1P02458 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC20.25■□□□□ 0.83
COL2A1P02458 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL2A1P02458 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
COL2A1P02458 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC20.25■□□□□ 0.83
COL2A1P02458 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
COL2A1P02458 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL2A1P02458 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL2A1P02458 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC20.25■□□□□ 0.83
COL2A1P02458 HARS-203ENST00000431330 1774 ntTSL 2 BASIC20.25■□□□□ 0.83
COL2A1P02458 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL2A1P02458 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC20.25■□□□□ 0.83
COL2A1P02458 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
COL2A1P02458 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL2A1P02458 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL2A1P02458 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC20.24■□□□□ 0.83
COL2A1P02458 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
COL2A1P02458 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC20.24■□□□□ 0.83
COL2A1P02458 RPL28-205ENST00000558131 444 ntTSL 5 BASIC20.24■□□□□ 0.83
COL2A1P02458 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC20.24■□□□□ 0.83
COL2A1P02458 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC20.24■□□□□ 0.83
COL2A1P02458 ORC5-208ENST00000626700 344 ntTSL 3 BASIC20.24■□□□□ 0.83
COL2A1P02458 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC20.24■□□□□ 0.83
COL2A1P02458 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL2A1P02458 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC20.24■□□□□ 0.83
COL2A1P02458 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.24■□□□□ 0.83
COL2A1P02458 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL2A1P02458 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL2A1P02458 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.24■□□□□ 0.83
COL2A1P02458 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL2A1P02458 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
COL2A1P02458 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL2A1P02458 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL2A1P02458 AC002056.1-201ENST00000395613 760 ntBASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms