Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SEMA3DO95025 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SEMA3DO95025 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SEMA3DO95025 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.81■□□□□ 0.28
SEMA3DO95025 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.81■□□□□ 0.28
SEMA3DO95025 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.81■□□□□ 0.28
SEMA3DO95025 MYCLP1-201ENST00000372451 1075 ntBASIC16.81■□□□□ 0.28
SEMA3DO95025 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.81■□□□□ 0.28
SEMA3DO95025 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SEMA3DO95025 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
SEMA3DO95025 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SEMA3DO95025 SIRPAP1-201ENST00000448467 1770 ntBASIC16.81■□□□□ 0.28
SEMA3DO95025 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SEMA3DO95025 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SEMA3DO95025 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SEMA3DO95025 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.81■□□□□ 0.28
SEMA3DO95025 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SEMA3DO95025 AL023806.1-201ENST00000603994 1649 ntBASIC16.81■□□□□ 0.28
SEMA3DO95025 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
SEMA3DO95025 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SEMA3DO95025 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
SEMA3DO95025 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SEMA3DO95025 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.81■□□□□ 0.28
SEMA3DO95025 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.8■□□□□ 0.28
SEMA3DO95025 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
SEMA3DO95025 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.8■□□□□ 0.28
SEMA3DO95025 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.8■□□□□ 0.28
SEMA3DO95025 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
SEMA3DO95025 PP12613-201ENST00000424958 2230 ntBASIC16.8■□□□□ 0.28
SEMA3DO95025 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SEMA3DO95025 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SEMA3DO95025 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SEMA3DO95025 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SEMA3DO95025 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.8■□□□□ 0.28
SEMA3DO95025 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.8■□□□□ 0.28
SEMA3DO95025 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SEMA3DO95025 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SEMA3DO95025 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SEMA3DO95025 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
SEMA3DO95025 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SEMA3DO95025 FAM220CP-201ENST00000395253 831 ntBASIC16.8■□□□□ 0.28
SEMA3DO95025 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SEMA3DO95025 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.8■□□□□ 0.28
SEMA3DO95025 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.8■□□□□ 0.28
SEMA3DO95025 AC009533.2-201ENST00000543664 586 ntBASIC16.8■□□□□ 0.28
SEMA3DO95025 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
SEMA3DO95025 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.8■□□□□ 0.28
SEMA3DO95025 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.8■□□□□ 0.28
SEMA3DO95025 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SEMA3DO95025 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SEMA3DO95025 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.8■□□□□ 0.28
SEMA3DO95025 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.8■□□□□ 0.28
SEMA3DO95025 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SEMA3DO95025 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SEMA3DO95025 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SEMA3DO95025 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC16.8■□□□□ 0.28
SEMA3DO95025 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC16.8■□□□□ 0.28
SEMA3DO95025 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SEMA3DO95025 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SEMA3DO95025 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SEMA3DO95025 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC16.8■□□□□ 0.28
SEMA3DO95025 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
SEMA3DO95025 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC16.79■□□□□ 0.28
SEMA3DO95025 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.79■□□□□ 0.28
SEMA3DO95025 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
SEMA3DO95025 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SEMA3DO95025 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SEMA3DO95025 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.79■□□□□ 0.28
SEMA3DO95025 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SEMA3DO95025 KRT18P1-202ENST00000452408 1331 ntBASIC16.79■□□□□ 0.28
SEMA3DO95025 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SEMA3DO95025 AC084018.2-201ENST00000613093 2607 ntBASIC16.79■□□□□ 0.28
SEMA3DO95025 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.79■□□□□ 0.28
SEMA3DO95025 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SEMA3DO95025 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SEMA3DO95025 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.79■□□□□ 0.28
SEMA3DO95025 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SEMA3DO95025 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SEMA3DO95025 AC103564.2-201ENST00000432853 1299 ntBASIC16.79■□□□□ 0.28
SEMA3DO95025 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.79■□□□□ 0.28
SEMA3DO95025 KRT18P35-201ENST00000510488 1269 ntBASIC16.79■□□□□ 0.28
SEMA3DO95025 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.79■□□□□ 0.28
SEMA3DO95025 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.79■□□□□ 0.28
SEMA3DO95025 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.79■□□□□ 0.28
SEMA3DO95025 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
SEMA3DO95025 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.79■□□□□ 0.28
SEMA3DO95025 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
SEMA3DO95025 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.79■□□□□ 0.28
SEMA3DO95025 Z69720.1-201ENST00000601483 472 ntBASIC16.79■□□□□ 0.28
SEMA3DO95025 AC091076.1-201ENST00000610741 619 ntBASIC16.79■□□□□ 0.28
SEMA3DO95025 AL139327.4-201ENST00000612362 153 ntBASIC16.79■□□□□ 0.28
SEMA3DO95025 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SEMA3DO95025 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SEMA3DO95025 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.79■□□□□ 0.28
SEMA3DO95025 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
SEMA3DO95025 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SEMA3DO95025 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
SEMA3DO95025 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SEMA3DO95025 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.79■□□□□ 0.28
SEMA3DO95025 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms