Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SMIM28A0A1B0GU29 PMS2P7-201ENST00000506558 1336 ntBASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 GPR89P-201ENST00000407924 1495 ntBASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 SLC4A1APP2-201ENST00000424054 1259 ntBASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 ACTG1P4-201ENST00000425123 1122 ntBASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 AC108751.1-201ENST00000490852 363 ntBASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 RPS15P9-201ENST00000494093 319 ntBASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SMIM28A0A1B0GU29 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 LYSMD4-203ENST00000378904 2122 ntBASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 PTCHD3P3-201ENST00000403073 906 ntBASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 MED15P5-201ENST00000423150 992 ntBASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 AL591424.1-201ENST00000442569 1213 ntBASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 AC008667.4-201ENST00000607370 168 ntBASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 AC133963.1-201ENST00000504166 1679 ntBASIC18.73■□□□□ 0.59
SMIM28A0A1B0GU29 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 PGAM5P1-201ENST00000518923 814 ntBASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 IGHV3-65-201ENST00000523210 341 ntBASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
SMIM28A0A1B0GU29 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 AC007613.1-201ENST00000572811 2597 ntBASIC18.71■□□□□ 0.59
SMIM28A0A1B0GU29 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms