Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC18.31■□□□□ 0.52
USP3Q9Y6I4 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 RPS2P28-201ENST00000314255 741 ntBASIC18.3■□□□□ 0.52
USP3Q9Y6I4 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 LYSMD4-203ENST00000378904 2122 ntBASIC18.3■□□□□ 0.52
USP3Q9Y6I4 LAGE3P1-201ENST00000425356 484 ntBASIC18.3■□□□□ 0.52
USP3Q9Y6I4 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 AL589182.2-201ENST00000619332 1049 ntBASIC18.3■□□□□ 0.52
USP3Q9Y6I4 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
USP3Q9Y6I4 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.29■□□□□ 0.52
USP3Q9Y6I4 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
USP3Q9Y6I4 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
USP3Q9Y6I4 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP3Q9Y6I4 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP3Q9Y6I4 AC046185.3-201ENST00000623228 1824 ntBASIC18.28■□□□□ 0.52
USP3Q9Y6I4 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP3Q9Y6I4 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP3Q9Y6I4 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.28■□□□□ 0.52
USP3Q9Y6I4 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
USP3Q9Y6I4 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP3Q9Y6I4 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP3Q9Y6I4 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
USP3Q9Y6I4 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.28■□□□□ 0.52
USP3Q9Y6I4 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.28■□□□□ 0.52
USP3Q9Y6I4 AC012640.2-201ENST00000561606 901 ntBASIC18.28■□□□□ 0.52
USP3Q9Y6I4 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.28■□□□□ 0.52
USP3Q9Y6I4 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.28■□□□□ 0.52
USP3Q9Y6I4 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.28■□□□□ 0.52
USP3Q9Y6I4 AC008735.5-201ENST00000623544 497 ntBASIC18.28■□□□□ 0.52
USP3Q9Y6I4 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
USP3Q9Y6I4 AL138688.1-201ENST00000624851 1594 ntBASIC18.28■□□□□ 0.52
USP3Q9Y6I4 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms