Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 PCED1CP-201ENST00000419887 785 ntBASIC14.22□□□□□ -0.13
FOXA2Q9Y261 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 FAM86EP-206ENST00000510506 987 ntBASIC14.22□□□□□ -0.13
FOXA2Q9Y261 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 AC011498.5-201ENST00000592027 486 ntBASIC14.22□□□□□ -0.13
FOXA2Q9Y261 AC091076.1-201ENST00000610741 619 ntBASIC14.22□□□□□ -0.13
FOXA2Q9Y261 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 Z83836.1-201ENST00000624605 1642 ntBASIC14.22□□□□□ -0.13
FOXA2Q9Y261 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
FOXA2Q9Y261 IER3-202ENST00000376377 1350 ntBASIC14.22□□□□□ -0.13
FOXA2Q9Y261 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 AC005104.2-201ENST00000427818 678 ntBASIC14.21□□□□□ -0.13
FOXA2Q9Y261 ISCU-203ENST00000431221 799 ntTSL 2 BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 AC005332.3-201ENST00000589904 676 ntBASIC14.21□□□□□ -0.13
FOXA2Q9Y261 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 AL390719.2-201ENST00000606993 987 ntBASIC14.21□□□□□ -0.13
FOXA2Q9Y261 AP000550.4-202ENST00000639755 178 ntBASIC14.21□□□□□ -0.13
FOXA2Q9Y261 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
FOXA2Q9Y261 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
FOXA2Q9Y261 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC14.21□□□□□ -0.14
FOXA2Q9Y261 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
FOXA2Q9Y261 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
FOXA2Q9Y261 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
FOXA2Q9Y261 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.14
FOXA2Q9Y261 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
FOXA2Q9Y261 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
FOXA2Q9Y261 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 TSPY12P-201ENST00000421279 868 ntBASIC14.2□□□□□ -0.14
FOXA2Q9Y261 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC14.2□□□□□ -0.14
FOXA2Q9Y261 AC112698.1-201ENST00000510299 916 ntBASIC14.2□□□□□ -0.14
FOXA2Q9Y261 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms