Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
LIMCH1Q9UPQ0 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 RCN1P1-201ENST00000400413 996 ntBASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
LIMCH1Q9UPQ0 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 MYCLP1-201ENST00000372451 1075 ntBASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 SLC25A1P3-201ENST00000395415 828 ntBASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 AL845331.1-201ENST00000424978 1190 ntBASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 RN7SL850P-201ENST00000579959 291 ntBASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 AC124864.1-201ENST00000623408 392 ntBASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 VPS72-207ENST00000640458 689 ntTSL 5 BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
LIMCH1Q9UPQ0 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
LIMCH1Q9UPQ0 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIMCH1Q9UPQ0 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC20.64■□□□□ 0.9
LIMCH1Q9UPQ0 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
LIMCH1Q9UPQ0 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
LIMCH1Q9UPQ0 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 LINC01238-205ENST00000567549 1107 ntBASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 AC109462.3-201ENST00000573934 613 ntBASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 AC011498.5-201ENST00000592027 486 ntBASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 AL592071.1-201ENST00000611956 408 ntBASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 AC046185.3-201ENST00000623228 1824 ntBASIC20.64■□□□□ 0.89
LIMCH1Q9UPQ0 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms