Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.33■□□□□ 0.36
MKS1Q9NXB0 SNORA78-201ENST00000459373 127 ntBASIC17.33■□□□□ 0.36
MKS1Q9NXB0 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.33■□□□□ 0.36
MKS1Q9NXB0 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.33■□□□□ 0.36
MKS1Q9NXB0 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.33■□□□□ 0.36
MKS1Q9NXB0 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
MKS1Q9NXB0 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.33■□□□□ 0.36
MKS1Q9NXB0 AL138966.2-201ENST00000621997 464 ntBASIC17.33■□□□□ 0.36
MKS1Q9NXB0 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.33■□□□□ 0.36
MKS1Q9NXB0 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.33■□□□□ 0.36
MKS1Q9NXB0 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.36
MKS1Q9NXB0 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
MKS1Q9NXB0 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MKS1Q9NXB0 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MKS1Q9NXB0 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.33■□□□□ 0.36
MKS1Q9NXB0 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
MKS1Q9NXB0 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MKS1Q9NXB0 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
MKS1Q9NXB0 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MKS1Q9NXB0 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MKS1Q9NXB0 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 AC068472.1-201ENST00000474589 881 ntBASIC17.32■□□□□ 0.36
MKS1Q9NXB0 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 AC019129.2-201ENST00000609837 1235 ntBASIC17.32■□□□□ 0.36
MKS1Q9NXB0 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
MKS1Q9NXB0 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 RNF216P1-203ENST00000404404 2427 ntBASIC17.31■□□□□ 0.36
MKS1Q9NXB0 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 OR6D1P-202ENST00000641007 5290 ntBASIC17.31■□□□□ 0.36
MKS1Q9NXB0 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 MMP23A-201ENST00000234610 1017 ntBASIC17.31■□□□□ 0.36
MKS1Q9NXB0 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 AC010460.3-201ENST00000511359 1579 ntBASIC17.31■□□□□ 0.36
MKS1Q9NXB0 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.31■□□□□ 0.36
MKS1Q9NXB0 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.3■□□□□ 0.36
MKS1Q9NXB0 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms