Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC20.06■□□□□ 0.8
USP28Q96RU2 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
USP28Q96RU2 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP28Q96RU2 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP28Q96RU2 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP28Q96RU2 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP28Q96RU2 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.06■□□□□ 0.8
USP28Q96RU2 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP28Q96RU2 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
USP28Q96RU2 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP28Q96RU2 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP28Q96RU2 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
USP28Q96RU2 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP28Q96RU2 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP28Q96RU2 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.06■□□□□ 0.8
USP28Q96RU2 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP28Q96RU2 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP28Q96RU2 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC20.06■□□□□ 0.8
USP28Q96RU2 GUSBP12-201ENST00000513727 720 ntBASIC20.06■□□□□ 0.8
USP28Q96RU2 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.06■□□□□ 0.8
USP28Q96RU2 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
USP28Q96RU2 AC124864.1-201ENST00000623408 392 ntBASIC20.06■□□□□ 0.8
USP28Q96RU2 VPS72-207ENST00000640458 689 ntTSL 5 BASIC20.06■□□□□ 0.8
USP28Q96RU2 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP28Q96RU2 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP28Q96RU2 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP28Q96RU2 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC20.06■□□□□ 0.8
USP28Q96RU2 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP28Q96RU2 AC124067.4-201ENST00000519691 2379 ntBASIC20.06■□□□□ 0.8
USP28Q96RU2 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP28Q96RU2 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC20.06■□□□□ 0.8
USP28Q96RU2 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP28Q96RU2 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC20.05■□□□□ 0.8
USP28Q96RU2 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.05■□□□□ 0.8
USP28Q96RU2 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP28Q96RU2 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.05■□□□□ 0.8
USP28Q96RU2 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP28Q96RU2 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC20.05■□□□□ 0.8
USP28Q96RU2 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC20.05■□□□□ 0.8
USP28Q96RU2 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP28Q96RU2 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP28Q96RU2 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.05■□□□□ 0.8
USP28Q96RU2 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP28Q96RU2 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP28Q96RU2 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP28Q96RU2 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.05■□□□□ 0.8
USP28Q96RU2 AC109462.3-201ENST00000573934 613 ntBASIC20.05■□□□□ 0.8
USP28Q96RU2 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC20.05■□□□□ 0.8
USP28Q96RU2 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC20.05■□□□□ 0.8
USP28Q96RU2 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP28Q96RU2 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.05■□□□□ 0.8
USP28Q96RU2 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC20.05■□□□□ 0.8
USP28Q96RU2 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC20.05■□□□□ 0.8
USP28Q96RU2 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.05■□□□□ 0.8
USP28Q96RU2 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP28Q96RU2 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
USP28Q96RU2 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP28Q96RU2 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP28Q96RU2 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP28Q96RU2 AGGF1P2-201ENST00000426656 2106 ntBASIC20.05■□□□□ 0.8
USP28Q96RU2 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
USP28Q96RU2 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP28Q96RU2 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP28Q96RU2 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP28Q96RU2 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP28Q96RU2 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
USP28Q96RU2 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC20.04■□□□□ 0.8
USP28Q96RU2 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP28Q96RU2 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP28Q96RU2 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC20.04■□□□□ 0.8
USP28Q96RU2 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP28Q96RU2 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP28Q96RU2 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
USP28Q96RU2 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC20.04■□□□□ 0.8
USP28Q96RU2 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP28Q96RU2 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP28Q96RU2 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP28Q96RU2 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC20.04■□□□□ 0.8
USP28Q96RU2 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC20.04■□□□□ 0.8
USP28Q96RU2 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.04■□□□□ 0.8
USP28Q96RU2 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC20.04■□□□□ 0.8
USP28Q96RU2 AC011498.5-201ENST00000592027 486 ntBASIC20.04■□□□□ 0.8
USP28Q96RU2 AL138831.2-201ENST00000606564 490 ntBASIC20.04■□□□□ 0.8
USP28Q96RU2 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP28Q96RU2 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP28Q96RU2 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
USP28Q96RU2 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP28Q96RU2 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP28Q96RU2 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP28Q96RU2 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP28Q96RU2 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP28Q96RU2 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP28Q96RU2 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP28Q96RU2 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.03■□□□□ 0.8
USP28Q96RU2 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP28Q96RU2 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC20.03■□□□□ 0.8
USP28Q96RU2 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP28Q96RU2 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP28Q96RU2 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP28Q96RU2 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms