Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CFAP54Q96N23 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
CFAP54Q96N23 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.06■□□□□ 0.32
CFAP54Q96N23 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CFAP54Q96N23 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CFAP54Q96N23 MPV17-208ENST00000405076 603 ntTSL 5 BASIC17.06■□□□□ 0.32
CFAP54Q96N23 AC005237.2-201ENST00000434368 219 ntBASIC17.06■□□□□ 0.32
CFAP54Q96N23 AL512638.1-201ENST00000457493 794 ntBASIC17.06■□□□□ 0.32
CFAP54Q96N23 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CFAP54Q96N23 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC17.06■□□□□ 0.32
CFAP54Q96N23 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.06■□□□□ 0.32
CFAP54Q96N23 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.06■□□□□ 0.32
CFAP54Q96N23 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CFAP54Q96N23 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CFAP54Q96N23 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CFAP54Q96N23 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CFAP54Q96N23 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CFAP54Q96N23 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CFAP54Q96N23 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CFAP54Q96N23 CD74-212ENST00000524315 584 ntTSL 5 BASIC17.05■□□□□ 0.32
CFAP54Q96N23 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CFAP54Q96N23 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.05■□□□□ 0.32
CFAP54Q96N23 KRT8P23-201ENST00000560090 1207 ntBASIC17.05■□□□□ 0.32
CFAP54Q96N23 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
CFAP54Q96N23 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CFAP54Q96N23 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CFAP54Q96N23 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CFAP54Q96N23 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CFAP54Q96N23 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CFAP54Q96N23 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CFAP54Q96N23 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CFAP54Q96N23 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC17.05■□□□□ 0.32
CFAP54Q96N23 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CFAP54Q96N23 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.05■□□□□ 0.32
CFAP54Q96N23 AC132938.6-201ENST00000623828 1655 ntBASIC17.05■□□□□ 0.32
CFAP54Q96N23 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CFAP54Q96N23 SIRPAP1-201ENST00000448467 1770 ntBASIC17.05■□□□□ 0.32
CFAP54Q96N23 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CFAP54Q96N23 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CFAP54Q96N23 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CFAP54Q96N23 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CFAP54Q96N23 KRT18P65-201ENST00000439811 1286 ntBASIC17.05■□□□□ 0.32
CFAP54Q96N23 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.05■□□□□ 0.32
CFAP54Q96N23 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CFAP54Q96N23 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CFAP54Q96N23 AC084121.4-201ENST00000641598 221 ntBASIC17.05■□□□□ 0.32
CFAP54Q96N23 AF228730.8-201ENST00000642140 221 ntBASIC17.05■□□□□ 0.32
CFAP54Q96N23 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.05■□□□□ 0.32
CFAP54Q96N23 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CFAP54Q96N23 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
CFAP54Q96N23 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CFAP54Q96N23 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.04■□□□□ 0.32
CFAP54Q96N23 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CFAP54Q96N23 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.04■□□□□ 0.32
CFAP54Q96N23 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.04■□□□□ 0.32
CFAP54Q96N23 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CFAP54Q96N23 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.04■□□□□ 0.32
CFAP54Q96N23 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.04■□□□□ 0.32
CFAP54Q96N23 TPI1-206ENST00000488464 791 ntTSL 5 BASIC17.04■□□□□ 0.32
CFAP54Q96N23 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CFAP54Q96N23 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CFAP54Q96N23 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
CFAP54Q96N23 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC17.04■□□□□ 0.32
CFAP54Q96N23 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CFAP54Q96N23 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CFAP54Q96N23 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.04■□□□□ 0.32
CFAP54Q96N23 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CFAP54Q96N23 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CFAP54Q96N23 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CFAP54Q96N23 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CFAP54Q96N23 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CFAP54Q96N23 AC092506.1-202ENST00000401022 528 ntBASIC17.04■□□□□ 0.32
CFAP54Q96N23 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CFAP54Q96N23 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC17.04■□□□□ 0.32
CFAP54Q96N23 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CFAP54Q96N23 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC17.04■□□□□ 0.32
CFAP54Q96N23 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CFAP54Q96N23 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.04■□□□□ 0.32
CFAP54Q96N23 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.04■□□□□ 0.32
CFAP54Q96N23 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CFAP54Q96N23 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CFAP54Q96N23 AL049757.1-201ENST00000616842 1596 ntBASIC17.03■□□□□ 0.32
CFAP54Q96N23 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.03■□□□□ 0.32
CFAP54Q96N23 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CFAP54Q96N23 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC17.03■□□□□ 0.32
CFAP54Q96N23 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
CFAP54Q96N23 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.03■□□□□ 0.32
CFAP54Q96N23 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
CFAP54Q96N23 NAT9-224ENST00000583757 583 ntTSL 3 BASIC17.03■□□□□ 0.32
CFAP54Q96N23 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC17.03■□□□□ 0.32
CFAP54Q96N23 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
CFAP54Q96N23 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CFAP54Q96N23 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.03■□□□□ 0.32
CFAP54Q96N23 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CFAP54Q96N23 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
CFAP54Q96N23 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CFAP54Q96N23 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.03■□□□□ 0.32
CFAP54Q96N23 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CFAP54Q96N23 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CFAP54Q96N23 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms