Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 LBH-204ENST00000406087 559 ntTSL 4 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 NARF-204ENST00000390006 1766 ntTSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 KRT18P27-201ENST00000427733 1299 ntBASIC5.44□□□□□ -1.54
SYNE1Q8NF91 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 AC093503.3-201ENST00000624917 2352 ntBASIC5.44□□□□□ -1.54
SYNE1Q8NF91 EML3-217ENST00000531557 2509 ntTSL 5 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC5.44□□□□□ -1.54
SYNE1Q8NF91 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 AC112777.1-201ENST00000540175 1423 ntBASIC5.43□□□□□ -1.54
SYNE1Q8NF91 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 HIST2H3DP1-201ENST00000401004 416 ntBASIC5.43□□□□□ -1.54
SYNE1Q8NF91 CENPM-204ENST00000402420 688 ntTSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 AC093909.1-201ENST00000504731 1122 ntBASIC5.43□□□□□ -1.54
SYNE1Q8NF91 PPOX-214ENST00000535223 664 ntTSL 3 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 AC011467.2-201ENST00000598425 242 ntBASIC5.43□□□□□ -1.54
SYNE1Q8NF91 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SYNE1Q8NF91 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms