Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 AC012615.1-201ENST00000565797 1299 ntBASIC19.5■□□□□ 0.71
CCDC65Q8IXS2 AC111152.3-201ENST00000569699 673 ntBASIC19.5■□□□□ 0.71
CCDC65Q8IXS2 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC65Q8IXS2 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC65Q8IXS2 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC65Q8IXS2 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CCDC65Q8IXS2 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC65Q8IXS2 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC65Q8IXS2 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC65Q8IXS2 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC65Q8IXS2 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC65Q8IXS2 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 AMT-250ENST00000637682 1823 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 AL645608.8-201ENST00000606034 2086 ntBASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 CROCCP2-202ENST00000412962 2773 ntBASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 UPK3BP1-201ENST00000428678 509 ntBASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 AC096582.2-201ENST00000510860 516 ntBASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 BNIP3P18-201ENST00000593976 575 ntBASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 AL049757.1-201ENST00000616842 1596 ntBASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC65Q8IXS2 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC65Q8IXS2 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 CTNS-203ENST00000399306 803 ntTSL 3 BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 POM121L3P-201ENST00000419331 1163 ntBASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.47■□□□□ 0.71
CCDC65Q8IXS2 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms