Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
RUNDC3AQ59EK9 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 HLA-F-220ENST00000434407 884 ntBASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 AC046185.3-201ENST00000623228 1824 ntBASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
RUNDC3AQ59EK9 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 AL023973.1-201ENST00000624619 620 ntBASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 LINC02012-201ENST00000608206 1725 ntBASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
RUNDC3AQ59EK9 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.58■□□□□ 0.25
RUNDC3AQ59EK9 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
RUNDC3AQ59EK9 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
RUNDC3AQ59EK9 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
RUNDC3AQ59EK9 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 SLC25A1P3-201ENST00000395415 828 ntBASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 AC096633.1-201ENST00000422446 749 ntBASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 KRT18P22-201ENST00000402024 1347 ntBASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 PCDHA14-201ENST00000506751 2298 ntBASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
RUNDC3AQ59EK9 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms