Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CHD9Q3L8U1 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CHD9Q3L8U1 MIR1909-201ENST00000411312 80 ntBASIC18.4■□□□□ 0.54
CHD9Q3L8U1 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.4■□□□□ 0.54
CHD9Q3L8U1 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.4■□□□□ 0.54
CHD9Q3L8U1 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
CHD9Q3L8U1 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
CHD9Q3L8U1 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHD9Q3L8U1 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC18.4■□□□□ 0.54
CHD9Q3L8U1 SLC25A6P2-201ENST00000497974 877 ntBASIC18.4■□□□□ 0.54
CHD9Q3L8U1 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CHD9Q3L8U1 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHD9Q3L8U1 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CHD9Q3L8U1 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.4■□□□□ 0.54
CHD9Q3L8U1 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
CHD9Q3L8U1 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CHD9Q3L8U1 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CHD9Q3L8U1 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
CHD9Q3L8U1 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC18.4■□□□□ 0.54
CHD9Q3L8U1 MIR6799-201ENST00000620297 69 ntBASIC18.4■□□□□ 0.54
CHD9Q3L8U1 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.39■□□□□ 0.54
CHD9Q3L8U1 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC18.39■□□□□ 0.54
CHD9Q3L8U1 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 AKAP8P1-201ENST00000434743 1349 ntBASIC18.39■□□□□ 0.53
CHD9Q3L8U1 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 IFT20-216ENST00000588477 774 ntTSL 5 BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 RBPMS2P1-201ENST00000437762 623 ntBASIC18.39■□□□□ 0.53
CHD9Q3L8U1 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CHD9Q3L8U1 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 TSSK5P-201ENST00000423978 907 ntBASIC18.38■□□□□ 0.53
CHD9Q3L8U1 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 AC026150.2-201ENST00000564693 1156 ntBASIC18.38■□□□□ 0.53
CHD9Q3L8U1 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 AC069120.2-201ENST00000524091 540 ntBASIC18.38■□□□□ 0.53
CHD9Q3L8U1 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
CHD9Q3L8U1 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 AC087163.2-201ENST00000457299 853 ntBASIC18.37■□□□□ 0.53
CHD9Q3L8U1 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CHD9Q3L8U1 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms