Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.32■□□□□ 0.36
SRP54P61011 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.32■□□□□ 0.36
SRP54P61011 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.32■□□□□ 0.36
SRP54P61011 LAGE3P1-201ENST00000425356 484 ntBASIC17.32■□□□□ 0.36
SRP54P61011 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.32■□□□□ 0.36
SRP54P61011 PRYP5-201ENST00000451909 266 ntBASIC17.32■□□□□ 0.36
SRP54P61011 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.32■□□□□ 0.36
SRP54P61011 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.32■□□□□ 0.36
SRP54P61011 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.32■□□□□ 0.36
SRP54P61011 AC105339.3-201ENST00000560043 636 ntBASIC17.32■□□□□ 0.36
SRP54P61011 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.32■□□□□ 0.36
SRP54P61011 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.32■□□□□ 0.36
SRP54P61011 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SRP54P61011 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SRP54P61011 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.32■□□□□ 0.36
SRP54P61011 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SRP54P61011 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.32■□□□□ 0.36
SRP54P61011 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
SRP54P61011 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SRP54P61011 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SRP54P61011 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SRP54P61011 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SRP54P61011 FLJ13224-201ENST00000313737 1514 ntBASIC17.31■□□□□ 0.36
SRP54P61011 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.31■□□□□ 0.36
SRP54P61011 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC17.31■□□□□ 0.36
SRP54P61011 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SRP54P61011 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SRP54P61011 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.31■□□□□ 0.36
SRP54P61011 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.31■□□□□ 0.36
SRP54P61011 ZNF259P1-201ENST00000407656 1365 ntBASIC17.31■□□□□ 0.36
SRP54P61011 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SRP54P61011 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SRP54P61011 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SRP54P61011 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SRP54P61011 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SRP54P61011 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SRP54P61011 AL020989.1-201ENST00000422979 469 ntBASIC17.31■□□□□ 0.36
SRP54P61011 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.31■□□□□ 0.36
SRP54P61011 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.31■□□□□ 0.36
SRP54P61011 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.31■□□□□ 0.36
SRP54P61011 IGHV3-22-201ENST00000520721 359 ntBASIC17.31■□□□□ 0.36
SRP54P61011 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SRP54P61011 KRT18P58-201ENST00000527480 1120 ntBASIC17.31■□□□□ 0.36
SRP54P61011 AC109462.3-201ENST00000573934 613 ntBASIC17.31■□□□□ 0.36
SRP54P61011 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SRP54P61011 AC019129.2-201ENST00000609837 1235 ntBASIC17.31■□□□□ 0.36
SRP54P61011 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SRP54P61011 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.31■□□□□ 0.36
SRP54P61011 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SRP54P61011 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SRP54P61011 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SRP54P61011 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SRP54P61011 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SRP54P61011 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.31■□□□□ 0.36
SRP54P61011 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
SRP54P61011 AC132938.5-201ENST00000624980 1813 ntBASIC17.31■□□□□ 0.36
SRP54P61011 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.3■□□□□ 0.36
SRP54P61011 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
SRP54P61011 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.3■□□□□ 0.36
SRP54P61011 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.3■□□□□ 0.36
SRP54P61011 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.3■□□□□ 0.36
SRP54P61011 AC098831.1-202ENST00000438821 336 ntBASIC17.3■□□□□ 0.36
SRP54P61011 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.3■□□□□ 0.36
SRP54P61011 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
SRP54P61011 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
SRP54P61011 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
SRP54P61011 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC17.3■□□□□ 0.36
SRP54P61011 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 KRT18P55-202ENST00000578578 1546 ntBASIC17.3■□□□□ 0.36
SRP54P61011 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.3■□□□□ 0.36
SRP54P61011 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.3■□□□□ 0.36
SRP54P61011 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.3■□□□□ 0.36
SRP54P61011 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.3■□□□□ 0.36
SRP54P61011 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.3■□□□□ 0.36
SRP54P61011 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SRP54P61011 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
SRP54P61011 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms