Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RHBDL3P58872 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RHBDL3P58872 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.64■□□□□ 0.9
RHBDL3P58872 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.64■□□□□ 0.9
RHBDL3P58872 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RHBDL3P58872 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RHBDL3P58872 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC20.64■□□□□ 0.89
RHBDL3P58872 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RHBDL3P58872 ATP6V0CP3-201ENST00000417255 467 ntBASIC20.64■□□□□ 0.89
RHBDL3P58872 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC20.64■□□□□ 0.89
RHBDL3P58872 AP006288.1-201ENST00000446065 395 ntBASIC20.64■□□□□ 0.89
RHBDL3P58872 URGCP-206ENST00000446958 365 ntTSL 2 BASIC20.64■□□□□ 0.89
RHBDL3P58872 PAWRP1-201ENST00000451083 565 ntBASIC20.64■□□□□ 0.89
RHBDL3P58872 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC20.64■□□□□ 0.89
RHBDL3P58872 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC20.64■□□□□ 0.89
RHBDL3P58872 AC005829.1-201ENST00000570002 483 ntBASIC20.64■□□□□ 0.89
RHBDL3P58872 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
RHBDL3P58872 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
RHBDL3P58872 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC20.64■□□□□ 0.89
RHBDL3P58872 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RHBDL3P58872 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RHBDL3P58872 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
RHBDL3P58872 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RHBDL3P58872 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RHBDL3P58872 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
RHBDL3P58872 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.64■□□□□ 0.89
RHBDL3P58872 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RHBDL3P58872 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RHBDL3P58872 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
RHBDL3P58872 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC20.63■□□□□ 0.89
RHBDL3P58872 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RHBDL3P58872 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
RHBDL3P58872 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RHBDL3P58872 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RHBDL3P58872 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
RHBDL3P58872 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
RHBDL3P58872 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RHBDL3P58872 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
RHBDL3P58872 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RHBDL3P58872 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
RHBDL3P58872 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RHBDL3P58872 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC20.63■□□□□ 0.89
RHBDL3P58872 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC20.63■□□□□ 0.89
RHBDL3P58872 DNAJB3-202ENST00000449667 1266 ntBASIC20.63■□□□□ 0.89
RHBDL3P58872 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RHBDL3P58872 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC20.63■□□□□ 0.89
RHBDL3P58872 KRT19P2-202ENST00000557173 1012 ntBASIC20.63■□□□□ 0.89
RHBDL3P58872 PDPK2P-202ENST00000562415 1191 ntBASIC20.63■□□□□ 0.89
RHBDL3P58872 CYB561-216ENST00000582297 897 ntTSL 3 BASIC20.63■□□□□ 0.89
RHBDL3P58872 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC20.63■□□□□ 0.89
RHBDL3P58872 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC20.63■□□□□ 0.89
RHBDL3P58872 C20orf181-201ENST00000623918 480 ntBASIC20.63■□□□□ 0.89
RHBDL3P58872 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RHBDL3P58872 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
RHBDL3P58872 NME9-203ENST00000383180 2133 ntTSL 2 BASIC20.63■□□□□ 0.89
RHBDL3P58872 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RHBDL3P58872 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC20.63■□□□□ 0.89
RHBDL3P58872 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC20.63■□□□□ 0.89
RHBDL3P58872 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC20.62■□□□□ 0.89
RHBDL3P58872 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RHBDL3P58872 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.62■□□□□ 0.89
RHBDL3P58872 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RHBDL3P58872 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.62■□□□□ 0.89
RHBDL3P58872 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC20.62■□□□□ 0.89
RHBDL3P58872 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RHBDL3P58872 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
RHBDL3P58872 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
RHBDL3P58872 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RHBDL3P58872 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
RHBDL3P58872 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC20.62■□□□□ 0.89
RHBDL3P58872 GGCT-205ENST00000409436 954 ntTSL 3 BASIC20.62■□□□□ 0.89
RHBDL3P58872 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC20.62■□□□□ 0.89
RHBDL3P58872 SLC25A6P5-201ENST00000435663 894 ntBASIC20.62■□□□□ 0.89
RHBDL3P58872 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC20.62■□□□□ 0.89
RHBDL3P58872 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC20.62■□□□□ 0.89
RHBDL3P58872 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC20.62■□□□□ 0.89
RHBDL3P58872 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RHBDL3P58872 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.62■□□□□ 0.89
RHBDL3P58872 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RHBDL3P58872 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RHBDL3P58872 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
RHBDL3P58872 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RHBDL3P58872 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
RHBDL3P58872 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RHBDL3P58872 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RHBDL3P58872 LYSMD4-203ENST00000378904 2122 ntBASIC20.62■□□□□ 0.89
RHBDL3P58872 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
RHBDL3P58872 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC20.61■□□□□ 0.89
RHBDL3P58872 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.61■□□□□ 0.89
RHBDL3P58872 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
RHBDL3P58872 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.61■□□□□ 0.89
RHBDL3P58872 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RHBDL3P58872 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
RHBDL3P58872 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC20.61■□□□□ 0.89
RHBDL3P58872 BCAR1-209ENST00000546196 1340 ntBASIC20.61■□□□□ 0.89
RHBDL3P58872 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RHBDL3P58872 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RHBDL3P58872 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RHBDL3P58872 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC20.61■□□□□ 0.89
RHBDL3P58872 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms