Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC13.23□□□□□ -0.29
FOXA3P55318 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
FOXA3P55318 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC13.23□□□□□ -0.29
FOXA3P55318 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC13.23□□□□□ -0.29
FOXA3P55318 AC009065.1-201ENST00000564055 1225 ntBASIC13.23□□□□□ -0.29
FOXA3P55318 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC13.23□□□□□ -0.29
FOXA3P55318 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC13.23□□□□□ -0.29
FOXA3P55318 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC13.23□□□□□ -0.29
FOXA3P55318 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
FOXA3P55318 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC13.23□□□□□ -0.29
FOXA3P55318 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 AL024508.2-201ENST00000607749 1894 ntBASIC13.23□□□□□ -0.29
FOXA3P55318 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
FOXA3P55318 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC13.22□□□□□ -0.29
FOXA3P55318 AC126755.1-201ENST00000525846 6405 ntBASIC13.22□□□□□ -0.29
FOXA3P55318 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC13.22□□□□□ -0.29
FOXA3P55318 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC13.22□□□□□ -0.29
FOXA3P55318 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.22□□□□□ -0.29
FOXA3P55318 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
FOXA3P55318 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC13.22□□□□□ -0.29
FOXA3P55318 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC13.22□□□□□ -0.29
FOXA3P55318 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
FOXA3P55318 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC13.22□□□□□ -0.29
FOXA3P55318 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC13.22□□□□□ -0.29
FOXA3P55318 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC13.22□□□□□ -0.29
FOXA3P55318 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
FOXA3P55318 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 TSPY6P-201ENST00000448518 926 ntBASIC13.22□□□□□ -0.29
FOXA3P55318 AC006970.2-201ENST00000450065 779 ntBASIC13.22□□□□□ -0.29
FOXA3P55318 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
FOXA3P55318 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC13.22□□□□□ -0.29
FOXA3P55318 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC13.22□□□□□ -0.29
FOXA3P55318 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC13.22□□□□□ -0.29
FOXA3P55318 NAT14-202ENST00000587400 416 ntTSL 5 BASIC13.22□□□□□ -0.29
FOXA3P55318 MTDHP1-201ENST00000605323 784 ntBASIC13.22□□□□□ -0.29
FOXA3P55318 AC116407.2-201ENST00000613639 860 ntBASIC13.22□□□□□ -0.29
FOXA3P55318 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC13.22□□□□□ -0.29
FOXA3P55318 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC13.22□□□□□ -0.29
FOXA3P55318 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC13.22□□□□□ -0.29
FOXA3P55318 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC13.22□□□□□ -0.29
FOXA3P55318 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
FOXA3P55318 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC13.22□□□□□ -0.29
FOXA3P55318 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
FOXA3P55318 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
FOXA3P55318 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC13.22□□□□□ -0.29
FOXA3P55318 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
FOXA3P55318 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
FOXA3P55318 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC13.22□□□□□ -0.29
FOXA3P55318 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
FOXA3P55318 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.29
FOXA3P55318 FRMD6-AS1-201ENST00000617151 2229 ntBASIC13.21□□□□□ -0.29
FOXA3P55318 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
FOXA3P55318 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC13.21□□□□□ -0.29
FOXA3P55318 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC13.21□□□□□ -0.29
FOXA3P55318 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC13.21□□□□□ -0.29
FOXA3P55318 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC13.21□□□□□ -0.29
FOXA3P55318 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC13.21□□□□□ -0.29
FOXA3P55318 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
FOXA3P55318 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
FOXA3P55318 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC13.21□□□□□ -0.29
FOXA3P55318 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
FOXA3P55318 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC13.21□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms