Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
MRE11P49959 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
MRE11P49959 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC20.5■□□□□ 0.87
MRE11P49959 BANP-201ENST00000286122 2368 ntTSL 5 BASIC20.5■□□□□ 0.87
MRE11P49959 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.5■□□□□ 0.87
MRE11P49959 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
MRE11P49959 LINC00304-203ENST00000565008 1864 ntBASIC20.5■□□□□ 0.87
MRE11P49959 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.5■□□□□ 0.87
MRE11P49959 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.5■□□□□ 0.87
MRE11P49959 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
MRE11P49959 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.49■□□□□ 0.87
MRE11P49959 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC20.49■□□□□ 0.87
MRE11P49959 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
MRE11P49959 OR6D1P-203ENST00000641209 4860 ntBASIC20.49■□□□□ 0.87
MRE11P49959 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 AL031133.1-201ENST00000406807 723 ntBASIC20.49■□□□□ 0.87
MRE11P49959 AL390955.1-201ENST00000428694 934 ntBASIC20.49■□□□□ 0.87
MRE11P49959 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
MRE11P49959 BX664615.1-201ENST00000443558 458 ntBASIC20.49■□□□□ 0.87
MRE11P49959 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC20.49■□□□□ 0.87
MRE11P49959 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.49■□□□□ 0.87
MRE11P49959 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC20.49■□□□□ 0.87
MRE11P49959 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC20.49■□□□□ 0.87
MRE11P49959 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.49■□□□□ 0.87
MRE11P49959 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.49■□□□□ 0.87
MRE11P49959 REXO1L10P-201ENST00000615707 1290 ntBASIC20.49■□□□□ 0.87
MRE11P49959 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC20.49■□□□□ 0.87
MRE11P49959 HLA-A-209ENST00000638375 975 ntBASIC20.49■□□□□ 0.87
MRE11P49959 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 AC006449.5-201ENST00000610658 2098 ntBASIC20.49■□□□□ 0.87
MRE11P49959 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC20.49■□□□□ 0.87
MRE11P49959 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
MRE11P49959 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
MRE11P49959 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
MRE11P49959 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MRE11P49959 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MRE11P49959 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC20.48■□□□□ 0.87
MRE11P49959 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MRE11P49959 AC022188.1-201ENST00000620960 1664 ntBASIC20.48■□□□□ 0.87
MRE11P49959 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MRE11P49959 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC20.48■□□□□ 0.87
MRE11P49959 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
MRE11P49959 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
MRE11P49959 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MRE11P49959 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
MRE11P49959 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MRE11P49959 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MRE11P49959 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MRE11P49959 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.48■□□□□ 0.87
MRE11P49959 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
MRE11P49959 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MRE11P49959 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MRE11P49959 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
MRE11P49959 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
MRE11P49959 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.48■□□□□ 0.87
MRE11P49959 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.48■□□□□ 0.87
MRE11P49959 HCG4P8-203ENST00000443049 980 ntBASIC20.48■□□□□ 0.87
MRE11P49959 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.48■□□□□ 0.87
MRE11P49959 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
MRE11P49959 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
MRE11P49959 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.48■□□□□ 0.87
MRE11P49959 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MRE11P49959 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
MRE11P49959 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
MRE11P49959 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
MRE11P49959 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
MRE11P49959 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
MRE11P49959 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.48■□□□□ 0.87
MRE11P49959 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC20.48■□□□□ 0.87
MRE11P49959 HYMAI-201ENST00000635591 3347 ntBASIC20.48■□□□□ 0.87
MRE11P49959 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
MRE11P49959 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MRE11P49959 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.47■□□□□ 0.87
MRE11P49959 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.47■□□□□ 0.87
MRE11P49959 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
MRE11P49959 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC20.47■□□□□ 0.87
MRE11P49959 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MRE11P49959 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MRE11P49959 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
MRE11P49959 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
MRE11P49959 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
MRE11P49959 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms