Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 HNRNPDP1-201ENST00000439535 754 ntBASIC13.61□□□□□ -0.23
HOXD3P31249 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXD3P31249 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXD3P31249 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
HOXD3P31249 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC13.61□□□□□ -0.23
HOXD3P31249 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
HOXD3P31249 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
HOXD3P31249 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
HOXD3P31249 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 PMS2P7-201ENST00000506558 1336 ntBASIC13.61□□□□□ -0.23
HOXD3P31249 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 CD276-201ENST00000318424 2738 ntTSL 5 BASIC13.61□□□□□ -0.23
HOXD3P31249 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HOXD3P31249 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXD3P31249 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC13.61□□□□□ -0.23
HOXD3P31249 ADM-208ENST00000534464 1640 ntTSL 2 BASIC13.61□□□□□ -0.23
HOXD3P31249 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXD3P31249 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC13.6□□□□□ -0.23
HOXD3P31249 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HOXD3P31249 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXD3P31249 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXD3P31249 ZNF259P1-201ENST00000407656 1365 ntBASIC13.6□□□□□ -0.23
HOXD3P31249 PAN3-AS1-201ENST00000563843 1351 ntBASIC13.6□□□□□ -0.23
HOXD3P31249 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
HOXD3P31249 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC13.6□□□□□ -0.23
HOXD3P31249 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXD3P31249 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXD3P31249 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC13.6□□□□□ -0.23
HOXD3P31249 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC13.6□□□□□ -0.23
HOXD3P31249 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
HOXD3P31249 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC13.6□□□□□ -0.23
HOXD3P31249 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HOXD3P31249 FUOM-202ENST00000368551 628 ntTSL 3 BASIC13.6□□□□□ -0.23
HOXD3P31249 FABP5-202ENST00000396359 986 ntTSL 5 BASIC13.6□□□□□ -0.23
HOXD3P31249 DDX43P3-201ENST00000441064 443 ntBASIC13.6□□□□□ -0.23
HOXD3P31249 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
HOXD3P31249 SCARNA2-201ENST00000458748 420 ntBASIC13.6□□□□□ -0.23
HOXD3P31249 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC13.6□□□□□ -0.23
HOXD3P31249 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HOXD3P31249 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HOXD3P31249 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXD3P31249 RPL18-209ENST00000550645 463 ntTSL 5 BASIC13.6□□□□□ -0.23
HOXD3P31249 RPL18-214ENST00000552588 559 ntTSL 3 BASIC13.6□□□□□ -0.23
HOXD3P31249 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC13.6□□□□□ -0.23
HOXD3P31249 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC13.6□□□□□ -0.23
HOXD3P31249 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC13.6□□□□□ -0.23
HOXD3P31249 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HOXD3P31249 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXD3P31249 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC13.6□□□□□ -0.23
HOXD3P31249 GZMM-202ENST00000592501 941 ntTSL 3 BASIC13.6□□□□□ -0.23
HOXD3P31249 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC13.6□□□□□ -0.23
HOXD3P31249 AC116407.3-201ENST00000623905 1129 ntBASIC13.6□□□□□ -0.23
HOXD3P31249 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC13.6□□□□□ -0.23
HOXD3P31249 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXD3P31249 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC13.6□□□□□ -0.23
HOXD3P31249 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXD3P31249 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
HOXD3P31249 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC13.6□□□□□ -0.23
HOXD3P31249 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXD3P31249 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
HOXD3P31249 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HOXD3P31249 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HOXD3P31249 HLA-DQB1-201ENST00000374943 1656 ntBASIC13.59□□□□□ -0.23
HOXD3P31249 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXD3P31249 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXD3P31249 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
HOXD3P31249 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HOXD3P31249 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC13.59□□□□□ -0.23
HOXD3P31249 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC13.59□□□□□ -0.23
HOXD3P31249 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXD3P31249 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HOXD3P31249 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXD3P31249 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXD3P31249 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC13.59□□□□□ -0.23
HOXD3P31249 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXD3P31249 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXD3P31249 CD9-202ENST00000382515 1229 ntTSL 5 BASIC13.59□□□□□ -0.23
HOXD3P31249 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC13.59□□□□□ -0.23
HOXD3P31249 BX842568.4-201ENST00000421222 227 ntBASIC13.59□□□□□ -0.23
HOXD3P31249 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC13.59□□□□□ -0.23
HOXD3P31249 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HOXD3P31249 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC13.59□□□□□ -0.23
HOXD3P31249 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC13.59□□□□□ -0.23
HOXD3P31249 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
HOXD3P31249 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HOXD3P31249 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC13.59□□□□□ -0.23
HOXD3P31249 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
HOXD3P31249 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
HOXD3P31249 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms