Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC17.58■□□□□ 0.41
SHOX2O60902 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.58■□□□□ 0.41
SHOX2O60902 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHOX2O60902 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SHOX2O60902 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHOX2O60902 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.58■□□□□ 0.41
SHOX2O60902 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHOX2O60902 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
SHOX2O60902 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
SHOX2O60902 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
SHOX2O60902 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC17.58■□□□□ 0.4
SHOX2O60902 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC17.58■□□□□ 0.4
SHOX2O60902 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC17.58■□□□□ 0.4
SHOX2O60902 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC17.58■□□□□ 0.4
SHOX2O60902 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.58■□□□□ 0.4
SHOX2O60902 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 AC131212.4-201ENST00000623606 975 ntBASIC17.58■□□□□ 0.4
SHOX2O60902 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.58■□□□□ 0.4
SHOX2O60902 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.58■□□□□ 0.4
SHOX2O60902 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.58■□□□□ 0.4
SHOX2O60902 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
SHOX2O60902 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SHOX2O60902 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.57■□□□□ 0.4
SHOX2O60902 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.57■□□□□ 0.4
SHOX2O60902 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC17.57■□□□□ 0.4
SHOX2O60902 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
SHOX2O60902 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC17.57■□□□□ 0.4
SHOX2O60902 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
SHOX2O60902 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC17.57■□□□□ 0.4
SHOX2O60902 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC17.57■□□□□ 0.4
SHOX2O60902 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC17.57■□□□□ 0.4
SHOX2O60902 AC124947.2-201ENST00000547118 1133 ntBASIC17.57■□□□□ 0.4
SHOX2O60902 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC17.57■□□□□ 0.4
SHOX2O60902 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC17.57■□□□□ 0.4
SHOX2O60902 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.57■□□□□ 0.4
SHOX2O60902 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
SHOX2O60902 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC17.57■□□□□ 0.4
SHOX2O60902 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
SHOX2O60902 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC17.57■□□□□ 0.4
SHOX2O60902 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SHOX2O60902 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHOX2O60902 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SHOX2O60902 LINC00167-201ENST00000530583 1419 ntBASIC17.56■□□□□ 0.4
SHOX2O60902 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHOX2O60902 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
SHOX2O60902 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHOX2O60902 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
SHOX2O60902 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHOX2O60902 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHOX2O60902 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.56■□□□□ 0.4
SHOX2O60902 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHOX2O60902 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.56■□□□□ 0.4
SHOX2O60902 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.56■□□□□ 0.4
SHOX2O60902 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHOX2O60902 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
SHOX2O60902 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.56■□□□□ 0.4
SHOX2O60902 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHOX2O60902 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
SHOX2O60902 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.56■□□□□ 0.4
SHOX2O60902 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms