Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.3■□□□□ 0.36
TRIM13O60858 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.3■□□□□ 0.36
TRIM13O60858 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
TRIM13O60858 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
TRIM13O60858 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.3■□□□□ 0.36
TRIM13O60858 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
TRIM13O60858 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TRIM13O60858 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM13O60858 KRT18P48-201ENST00000434763 852 ntBASIC17.3■□□□□ 0.36
TRIM13O60858 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM13O60858 RASA4DP-201ENST00000460726 1199 ntBASIC17.3■□□□□ 0.36
TRIM13O60858 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.3■□□□□ 0.36
TRIM13O60858 AL136038.4-201ENST00000603606 1261 ntBASIC17.3■□□□□ 0.36
TRIM13O60858 AL139327.4-201ENST00000612362 153 ntBASIC17.3■□□□□ 0.36
TRIM13O60858 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.3■□□□□ 0.36
TRIM13O60858 AC079602.3-201ENST00000623931 403 ntBASIC17.3■□□□□ 0.36
TRIM13O60858 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.3■□□□□ 0.36
TRIM13O60858 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
TRIM13O60858 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
TRIM13O60858 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
TRIM13O60858 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.3■□□□□ 0.36
TRIM13O60858 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRIM13O60858 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
TRIM13O60858 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TRIM13O60858 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM13O60858 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM13O60858 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
TRIM13O60858 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM13O60858 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
TRIM13O60858 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
TRIM13O60858 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.29■□□□□ 0.36
TRIM13O60858 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM13O60858 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.29■□□□□ 0.36
TRIM13O60858 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.29■□□□□ 0.36
TRIM13O60858 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 MIR4497-201ENST00000583208 89 ntBASIC17.29■□□□□ 0.36
TRIM13O60858 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
TRIM13O60858 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
TRIM13O60858 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
TRIM13O60858 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
TRIM13O60858 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 AC105020.1-201ENST00000435356 2205 ntBASIC17.29■□□□□ 0.36
TRIM13O60858 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM13O60858 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM13O60858 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.29■□□□□ 0.36
TRIM13O60858 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.29■□□□□ 0.36
TRIM13O60858 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
TRIM13O60858 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRIM13O60858 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM13O60858 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM13O60858 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM13O60858 PCDHA14-201ENST00000506751 2298 ntBASIC17.28■□□□□ 0.36
TRIM13O60858 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM13O60858 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM13O60858 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM13O60858 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM13O60858 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM13O60858 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
TRIM13O60858 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRIM13O60858 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.28■□□□□ 0.36
TRIM13O60858 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.28■□□□□ 0.36
TRIM13O60858 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms