Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGN4O00479 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGN4O00479 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.33■□□□□ 0.2
HMGN4O00479 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGN4O00479 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGN4O00479 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.33■□□□□ 0.2
HMGN4O00479 KRT8P26-201ENST00000534154 1276 ntBASIC16.33■□□□□ 0.2
HMGN4O00479 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC16.33■□□□□ 0.2
HMGN4O00479 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.33■□□□□ 0.2
HMGN4O00479 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
HMGN4O00479 IGHV3-41-201ENST00000613121 348 ntBASIC16.33■□□□□ 0.2
HMGN4O00479 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGN4O00479 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
HMGN4O00479 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGN4O00479 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.33■□□□□ 0.2
HMGN4O00479 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
HMGN4O00479 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.33■□□□□ 0.2
HMGN4O00479 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGN4O00479 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
HMGN4O00479 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGN4O00479 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGN4O00479 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGN4O00479 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGN4O00479 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.33■□□□□ 0.2
HMGN4O00479 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
HMGN4O00479 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGN4O00479 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGN4O00479 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
HMGN4O00479 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGN4O00479 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGN4O00479 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
HMGN4O00479 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGN4O00479 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HMGN4O00479 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGN4O00479 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
HMGN4O00479 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGN4O00479 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGN4O00479 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.32■□□□□ 0.2
HMGN4O00479 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
HMGN4O00479 AL031133.1-201ENST00000406807 723 ntBASIC16.32■□□□□ 0.2
HMGN4O00479 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.32■□□□□ 0.2
HMGN4O00479 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.32■□□□□ 0.2
HMGN4O00479 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGN4O00479 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.32■□□□□ 0.2
HMGN4O00479 AC109462.3-201ENST00000573934 613 ntBASIC16.32■□□□□ 0.2
HMGN4O00479 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGN4O00479 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.32■□□□□ 0.2
HMGN4O00479 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
HMGN4O00479 AC011676.5-201ENST00000624864 2660 ntBASIC16.32■□□□□ 0.2
HMGN4O00479 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.32■□□□□ 0.2
HMGN4O00479 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGN4O00479 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGN4O00479 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
HMGN4O00479 AC060834.1-201ENST00000443027 2032 ntBASIC16.31■□□□□ 0.2
HMGN4O00479 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGN4O00479 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
HMGN4O00479 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
HMGN4O00479 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGN4O00479 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.31■□□□□ 0.2
HMGN4O00479 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 MYCLP1-201ENST00000372451 1075 ntBASIC16.31■□□□□ 0.2
HMGN4O00479 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.31■□□□□ 0.2
HMGN4O00479 AC122714.2-201ENST00000502787 707 ntBASIC16.31■□□□□ 0.2
HMGN4O00479 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.31■□□□□ 0.2
HMGN4O00479 IGHV3-52-201ENST00000519770 353 ntBASIC16.31■□□□□ 0.2
HMGN4O00479 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGN4O00479 AC011840.4-201ENST00000578471 627 ntBASIC16.31■□□□□ 0.2
HMGN4O00479 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.31■□□□□ 0.2
HMGN4O00479 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGN4O00479 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGN4O00479 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
HMGN4O00479 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
HMGN4O00479 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
HMGN4O00479 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
HMGN4O00479 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.31■□□□□ 0.2
HMGN4O00479 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGN4O00479 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGN4O00479 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms