Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
CUEDC1Q9NWM3 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
CUEDC1Q9NWM3 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
CUEDC1Q9NWM3 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC17.02■□□□□ 0.32
CUEDC1Q9NWM3 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.02■□□□□ 0.32
CUEDC1Q9NWM3 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.02■□□□□ 0.32
CUEDC1Q9NWM3 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.02■□□□□ 0.32
CUEDC1Q9NWM3 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CUEDC1Q9NWM3 AL121772.3-201ENST00000610840 674 ntBASIC17.02■□□□□ 0.32
CUEDC1Q9NWM3 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
CUEDC1Q9NWM3 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
CUEDC1Q9NWM3 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.02■□□□□ 0.32
CUEDC1Q9NWM3 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CUEDC1Q9NWM3 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
CUEDC1Q9NWM3 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CUEDC1Q9NWM3 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CUEDC1Q9NWM3 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CUEDC1Q9NWM3 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CUEDC1Q9NWM3 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CUEDC1Q9NWM3 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.02■□□□□ 0.31
CUEDC1Q9NWM3 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CUEDC1Q9NWM3 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CUEDC1Q9NWM3 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 FAM220CP-201ENST00000395253 831 ntBASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 AC106795.1-205ENST00000512851 1056 ntBASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 AC104692.2-201ENST00000603054 253 ntBASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 AC114341.1-201ENST00000618070 349 ntBASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 AL031008.1-201ENST00000619963 541 ntBASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CUEDC1Q9NWM3 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 INTS4P1-201ENST00000438455 1935 ntBASIC17■□□□□ 0.31
CUEDC1Q9NWM3 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 TSPY19P-201ENST00000418461 509 ntBASIC17■□□□□ 0.31
CUEDC1Q9NWM3 TSPY18P-201ENST00000441642 509 ntBASIC17■□□□□ 0.31
CUEDC1Q9NWM3 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 FICD-205ENST00000552758 603 ntTSL 2 BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 LINC00896-202ENST00000609602 2128 ntBASIC17■□□□□ 0.31
CUEDC1Q9NWM3 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CUEDC1Q9NWM3 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CUEDC1Q9NWM3 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CUEDC1Q9NWM3 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CUEDC1Q9NWM3 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms