Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC22.55■■□□□ 1.2
SMC4Q9NTJ3 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC22.55■■□□□ 1.2
SMC4Q9NTJ3 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC22.55■■□□□ 1.2
SMC4Q9NTJ3 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC4Q9NTJ3 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC4Q9NTJ3 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC4Q9NTJ3 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC4Q9NTJ3 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC4Q9NTJ3 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC4Q9NTJ3 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC22.55■■□□□ 1.2
SMC4Q9NTJ3 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
SMC4Q9NTJ3 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC4Q9NTJ3 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC22.55■■□□□ 1.2
SMC4Q9NTJ3 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC4Q9NTJ3 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC4Q9NTJ3 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
SMC4Q9NTJ3 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
SMC4Q9NTJ3 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
SMC4Q9NTJ3 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 AMT-250ENST00000637682 1823 ntTSL 5 BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 POM121L3P-201ENST00000419331 1163 ntBASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 AC103564.2-201ENST00000432853 1299 ntBASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 FICD-205ENST00000552758 603 ntTSL 2 BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 AL139327.4-201ENST00000612362 153 ntBASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 AL645608.8-201ENST00000606034 2086 ntBASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 TPR-209ENST00000613151 2478 ntTSL 5 BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
SMC4Q9NTJ3 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 THAP5-204ENST00000438865 868 ntTSL 2 BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 IGHV3-52-201ENST00000519770 353 ntBASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 AC106820.2-201ENST00000563775 3264 ntBASIC22.53■■□□□ 1.2
SMC4Q9NTJ3 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 BANP-227ENST00000626016 2144 ntTSL 2 BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 CD9-202ENST00000382515 1229 ntTSL 5 BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 CTNS-203ENST00000399306 803 ntTSL 3 BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
SMC4Q9NTJ3 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms