Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC20.88■□□□□ 0.93
ZNF541Q9H0D2 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 AC026150.2-201ENST00000564693 1156 ntBASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 INO80E-210ENST00000567705 880 ntTSL 3 BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 HARS-203ENST00000431330 1774 ntTSL 2 BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
ZNF541Q9H0D2 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 RARRES2P8-201ENST00000566335 367 ntBASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 AL096828.2-201ENST00000567259 1965 ntBASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
ZNF541Q9H0D2 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
ZNF541Q9H0D2 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 SERBP1P5-201ENST00000510079 1181 ntBASIC20.84■□□□□ 0.93
ZNF541Q9H0D2 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms